BQ623450

Overview
NameBQ623450
Unique NameBQ623450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623450 vs. ExPASy Swiss-Prot
Match: CT024_MOUSE (Uncharacterized protein C20orf24 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 47/111 (42.34%), Postives = 76/111 (68.47%), Query Frame = 2
Query:  293 GHLSPFKFAKLLDPDASWD-KDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLLVWILVYSLAHF 622
            G L    ++K+L  DA+WD KD+  DV++W RQ++ALV G++WG +PL G + I  F LI++ ++Y Y++  L+IDEE++GG   L +EG   S  LF+++WI+ Y+  H+
Sbjct:   18 GALKVSVWSKVLRSDAAWDDKDEFLDVIYWFRQIIALVLGVIWGVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVIWIIFYTAIHY 128          
BLAST of BQ623450 vs. ExPASy Swiss-Prot
Match: CT024_HUMAN (Uncharacterized protein C20orf24 OS=Homo sapiens GN=C20orf24 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 42/100 (42.00%), Postives = 68/100 (68.00%), Query Frame = 2
Query:  293 GHLSPFKFAKLLDPDASW-DKDQLGDVLHWIRQVVALVCGLLWGSIPLVGGIWIVIFLLISSAIIYGYYAMVLKIDEEDFGGHGALLQEGLFASTTLFLL 589
            G L    ++K+L  DA+W DKD+  DV++W RQ++A+V G++WG +PL G + I  F LI++ ++Y Y++  L+IDEE++GG   L +EG   S  LF++
Sbjct:   18 GALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMV 117          
The following BLAST results are available for this feature:
BLAST of BQ623450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CT024_MOUSE5.923e-2242.34Uncharacterized protein C20orf24 homolog OS=Mus mu... [more]
CT024_HUMAN1.972e-1742.00Uncharacterized protein C20orf24 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00541 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00541 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623450 ID=BQ623450; Name=BQ623450; organism=Citrus sinensis; type=EST; length=683bp
TCCAGATCTACAGCAACGCATTTCAATTATTAATATTAATATTATTTTAT
TTTTAATTTCAATTTCTCAATCCGATCACTTTCTCCAATTTGCGAAAACC
CTAGTTCATGATTATTGCCGCTCTTTATTTCGTAACGAAGTCATAAATTC
GTTCTGACTACTTGTTAATTAATTCATCAATTAATCTGTCAAGATTTTGT
AAGTCGTCGTTGAGATTCGGAGAATGAAAGAGGGAAAAACCGTTAAATTC
AATCTTCACAGTCACCAGCAACAGCAACAGCATGCTAACGGCGGCCACTT
GTCTCCGTTCAAATTCGCCAAGTTGTTAGATCCAGACGCGTCCTGGGACA
AGGATCAATTGGGAGATGTGTTGCATTGGATTAGACAAGTGGTGGCTCTT
GTGTGTGGGTTGCTATGGGGCTCCATTCCTTTGGTTGGGGGCATATGGAT
TGTCATTTTTTTGCTGATATCATCTGCAATTATATACGGTTATTATGCAA
TGGTACTAAAGATTGACGAAGAAGATTTTGGCGGTCATGGAGCTCTCCTT
CAAGAGGGGCTTTTTGCTTCTACCACTCTTTTTCTGCTGGTATGGATTCT
AGTATACAGCTTGGCACACTTCTGATGGGGTTTGGGCACCACCAATTTGA
CTGTCCTCGATCGCCCATTGATGTTTGAATGAA
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