BQ623451

Overview
NameBQ623451
Unique NameBQ623451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623451_ssr39 microsatellite BQ623451_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1627 contig Csv1_Contig1627:124..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.093e-76
Identity = 131/187 (70.05%), Postives = 152/187 (81.28%), Query Frame = 2
Query:   77 FGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLV--ENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQLESDLEKSQISEKPT 631
            F GT QKC  C+KTVYLVDKL A+ RVYHKACFRCHHC  TLKLSNFNSF+GV+YCR HFDQLFKRTGSLEKSF+GTPK  KPE+    E ++A ++S+ F GTRDKC  C + VYP E+V V+G AYHR+CFKC HGGCTISPSNYIAHEG+LYCKHHHIQLF++KGNYSQLE +   +  +E  T
Sbjct:    4 FTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGSLEKSFDGTPKF-KPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVEETVAAPAESET 189          

HSP 2 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 2
Query:   56 AAAMASPFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRD 388
            A  ++S F GT+ KC AC K VY ++++  D   YH+ACF+C H   T+  SN+ + EG LYC+ H  QLFK+ G+  +           E   +N   Q    +   T++
Sbjct:   96 ANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVEETVAAPAESETQNTETQNAETQNADTQN 206          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CSRP3_RAT (Cysteine and glycine-rich protein 3 OS=Rattus norvegicus GN=Csrp3 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.362e-20
Identity = 59/197 (29.95%), Postives = 92/197 (46.70%), Query Frame = 2
Query:   74 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG----------------SLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG-NYSQLESDLEKSQ 613
            P  G   KC ACDKTVY  +++  + R +HK CF C  C+  L  +   + E  +YC+  + + +   G                 L   F+ +P   KP +     N  K S KF G  +KC  C ++VY  EKV   G  +H++CF C+  G ++  +N    +G+LYCK  + + F   G  +  L   +EK +
Sbjct:    2 PNWGGGAKCGACDKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRKYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSP---KPARAATTSNPSKFSAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFPCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTGIGFGGLTHQVEKKE 194          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CSRP3_MOUSE (Cysteine and glycine-rich protein 3 OS=Mus musculus GN=Csrp3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.362e-20
Identity = 58/197 (29.44%), Postives = 93/197 (47.21%), Query Frame = 2
Query:   74 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG----------------SLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG-NYSQLESDLEKSQ 613
            P  G   KC AC+KTVY  +++  + R +HK CF C  C+  L  +   + E  +YC+  + + +   G                 L   F+ +PK   P +     N  K S KF G  +KC  C ++VY  EKV   G  +H++CF+C+  G ++  +N    +G+LYCK  + + F   G  +  L   +EK +
Sbjct:    2 PNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSPK---PARAATTSNPSKFSAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTGIGFGGLTQQVEKKE 194          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CSRP3_HUMAN (Cysteine and glycine-rich protein 3 OS=Homo sapiens GN=CSRP3 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.362e-20
Identity = 58/197 (29.44%), Postives = 94/197 (47.72%), Query Frame = 2
Query:   74 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG----------------SLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG-NYSQLESDLEKSQ 613
            P  G   KC AC+KTVY  +++  + R +HK CF C  C+  L  +   + E  +YC+  + + +   G                 L   F+ +PK   P + V   N  K + KF G  +KC  C ++VY  EKV   G  +H++CF+C+  G ++  +N    +G+LYCK  + + F   G  +  L   +EK +
Sbjct:    2 PNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPK---PARSVTTSNPSKFTAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTGIGFGGLTQQVEKKE 194          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CSRP2_HUMAN (Cysteine and glycine-rich protein 2 OS=Homo sapiens GN=CSRP2 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.355e-19
Identity = 51/179 (28.49%), Postives = 85/179 (47.49%), Query Frame = 2
Query:   74 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGT------------PKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 574
            P  G   KC AC +TVY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT            P+ V+P +   N N  K + K+ G  +KC  C  +VY  EK+   G  +H++CF+C+  G ++  +     EG++YCK  + + F  KG
Sbjct:    2 PVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 179          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CSRP2_BOVIN (Cysteine and glycine-rich protein 2 OS=Bos taurus GN=CSRP2 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.355e-19
Identity = 51/179 (28.49%), Postives = 85/179 (47.49%), Query Frame = 2
Query:   74 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGT------------PKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 574
            P  G   KC AC +TVY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT            P+ V+P +   N N  K + K+ G  +KC  C  +VY  EK+   G  +H++CF+C+  G ++  +     EG++YCK  + + F  KG
Sbjct:    2 PVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 179          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CSRP2_RAT (Cysteine and glycine-rich protein 2 OS=Rattus norvegicus GN=Csrp2 PE=2 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 5.723e-19
Identity = 50/179 (27.93%), Postives = 84/179 (46.93%), Query Frame = 2
Query:   74 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGT------------PKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 574
            P  G   KC AC +TVY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT            P+  +P +   N N  K + K+ G  +KC  C  +VY  EK+   G  +H++CF+C+  G ++  +     EG++YCK  + + F  KG
Sbjct:    2 PVWGGGNKCGACGRTVYHAEEVQCDGRTFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESAQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 179          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CSRP2_MOUSE (Cysteine and glycine-rich protein 2 OS=Mus musculus GN=Csrp2 PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 9.762e-19
Identity = 50/179 (27.93%), Postives = 84/179 (46.93%), Query Frame = 2
Query:   74 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGT------------PKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 574
            P  G   KC AC +TVY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT            P+  +P +   N N  K + K+ G  +KC  C  +VY  EK+   G  +H++CF+C+  G ++  +     EG++YCK  + + F  KG
Sbjct:    2 PVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESAQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 179          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CSRP2_COTJA (Cysteine and glycine-rich protein 2 OS=Coturnix coturnix japonica GN=CSRP2 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.710e-18
Identity = 52/180 (28.89%), Postives = 84/180 (46.67%), Query Frame = 2
Query:   74 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL-------------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 574
            P  G   KC AC +TVY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT  + + E+L               N N  K + KF G  +KC  C  +VY  EKV   G  +H++CF+C+  G ++  +     EG++YCK  + + F  KG
Sbjct:    2 PNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESSPSPHRPTTNPNTSKFAQKFGGA-EKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 180          
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Match: CSRP2_CHICK (Cysteine and glycine-rich protein 2 OS=Gallus gallus GN=CSRP2 PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 3.710e-18
Identity = 52/180 (28.89%), Postives = 84/180 (46.67%), Query Frame = 2
Query:   74 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL-------------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 574
            P  G   KC AC +TVY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT  + + E+L               N N  K + KF G  +KC  C  +VY  EKV   G  +H++CF+C+  G ++  +     EG++YCK  + + F  KG
Sbjct:    2 PNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESTPSPHRPTTNPNTSKFAQKFGGA-EKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 180          
The following BLAST results are available for this feature:
BLAST of BQ623451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SF3_HELAN5.093e-7670.05Pollen-specific protein SF3 OS=Helianthus annuus G... [more]
CSRP3_RAT1.362e-2029.95Cysteine and glycine-rich protein 3 OS=Rattus norv... [more]
CSRP3_MOUSE1.362e-2029.44Cysteine and glycine-rich protein 3 OS=Mus musculu... [more]
CSRP3_HUMAN1.362e-2029.44Cysteine and glycine-rich protein 3 OS=Homo sapien... [more]
CSRP2_HUMAN3.355e-1928.49Cysteine and glycine-rich protein 2 OS=Homo sapien... [more]
CSRP2_BOVIN3.355e-1928.49Cysteine and glycine-rich protein 2 OS=Bos taurus ... [more]
CSRP2_RAT5.723e-1927.93Cysteine and glycine-rich protein 2 OS=Rattus norv... [more]
CSRP2_MOUSE9.762e-1927.93Cysteine and glycine-rich protein 2 OS=Mus musculu... [more]
CSRP2_COTJA3.710e-1828.89Cysteine and glycine-rich protein 2 OS=Coturnix co... [more]
CSRP2_CHICK3.710e-1828.89Cysteine and glycine-rich protein 2 OS=Gallus gall... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00542 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00542 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623451 ID=BQ623451; Name=BQ623451; organism=Citrus sinensis; type=EST; length=655bp
CTCTTAATATAATAAATCTGAGGTTCGGTTGGACCGGAAGCTAGCTAGCT
AGCAAGCAGCAGCCATGGCATCACCCTTTGGAGGAACCCAACAAAAATGC
ATGGCCTGTGACAAAACTGTGTACCTTGTTGATAAGTTGACGGCCGATAA
TCGGGTCTATCACAAAGCTTGCTTCCGGTGCCACCATTGCAAAGGAACCC
TCAAGCTCAGCAACTTCAATTCCTTTGAGGGGGTCCTGTATTGCAGGCCT
CACTTTGATCAGCTCTTCAAGAGAACTGGCAGCCTGGAGAAGAGTTTTGA
AGGAACACCAAAGATTGTGAAACCTGAAAAGCTCGTTGAAAATGAGAATG
CACAGAAAGTCTCCAACAAGTTTGTGGGCACCAGAGATAAATGTGTGGGA
TGCGATAGGACTGTTTATCCAACTGAGAAGGTTTCTGTAAATGGCGCCGC
ATATCATAGGAGCTGCTTCAAGTGCAGCCATGGAGGTTGCACCATCAGCC
CATCAAATTATATTGCCCATGAGGGGAAACTCTACTGCAAGCATCATCAC
ATACAACTCTTCAGGGAGAAAGGAAACTACAGCCAGCTTGAGAGTGATCT
TGAGAAGAGTCAAATCTCTGAGAAGCCAACTCCTGTCCAAATTGCTGCCG
AATCA
back to top