BQ623476

Overview
NameBQ623476
Unique NameBQ623476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:391..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 5.732e-47
Identity = 85/97 (87.63%), Postives = 92/97 (94.85%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPWKSF 308
            FGKPQGTCARV+IGQVLLSVRCKD NSHHAQEALRRAKFKFP RQKIIVSRKWGFTKF+R DY++WKS+NRI+PDGVNAKLLGCHGPLA RQP K+F
Sbjct:  119 FGKPQGTCARVSIGQVLLSVRCKDGNSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGVNAKLLGCHGPLANRQPGKAF 215          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.145e-45
Identity = 87/101 (86.14%), Postives = 93/101 (92.08%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPWKSFPGSN 320
            FGKPQG CARVAIGQVLLSVRCKD NS+HAQEALRRAKFKFPGRQKIIVSRKWGFTKFSR DYL++KSENRIVPDGVNAKLLG HGPLA RQP ++F  S+
Sbjct:  119 FGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFLSSS 219          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 4.541e-44
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPWKSF 308
            FGKPQG CARVAIGQVLLSVRCKD N++HAQEALRRAKFKFP RQKIIVSRKWGFTKFSR DYL++KSENRIVPDGVNAKLLGCHG LA RQP ++F
Sbjct:   48 FGKPQGVCARVAIGQVLLSVRCKDGNANHAQEALRRAKFKFPRRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGCHGRLAARQPGRAF 144          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.944e-43
Identity = 83/97 (85.57%), Postives = 90/97 (92.78%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPWKSF 308
            FGKPQG CARVAIGQVLLSVRCKD+NSH+AQEALRRAKFKFPGRQKIIVSRKWGFTK +RADY R KSENRI+PDGVNAKLLGCHG LA R+P ++F
Sbjct:  119 FGKPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNAKLLGCHGRLANRKPGRAF 215          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_PINTA (60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.908e-42
Identity = 78/97 (80.41%), Postives = 92/97 (94.85%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPWKSF 308
            FGKPQGTCARVAIGQVLLSVR +D++S+HAQEALRRAKFKFPGR+KIIV+RKWGFTK++RADYL+WK+ENRIVPDGVN KLLGC GPL+ R+P ++F
Sbjct:  119 FGKPQGTCARVAIGQVLLSVRSRDNHSNHAQEALRRAKFKFPGREKIIVNRKWGFTKYTRADYLKWKTENRIVPDGVNPKLLGCRGPLSNRKPGQAF 215          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 2.110e-41
Identity = 79/97 (81.44%), Postives = 85/97 (87.63%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPWKSF 308
            FGK  GTCARVAIGQVLLSVRCKD++ HHAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RADY + + E RIVPDGVNAK L CHGPLA RQP  +F
Sbjct:  119 FGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAF 215          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 8.016e-41
Identity = 77/97 (79.38%), Postives = 85/97 (87.63%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPWKSF 308
            FGK  GTCARVAIGQVLLSVRCKD++ HHAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAD+ + + E R+VPDGVNAK L CHGPLA RQP  +F
Sbjct:  119 FGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAF 215          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.158e-39
Identity = 79/97 (81.44%), Postives = 85/97 (87.63%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPWKSF 308
            FGKPQGTCARV IGQVLLSVRCKD+N+ HA EALRRAKFKFP RQKII SRKWGFTKFSRADYL++KSE RIVPDGVNAKLL  HG L +R P K+F
Sbjct:  119 FGKPQGTCARVDIGQVLLSVRCKDNNAAHASEALRRAKFKFPARQKIIESRKWGFTKFSRADYLKYKSEGRIVPDGVNAKLLANHGRLEKRAPGKAF 215          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.512e-39
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPWKSF 308
            FGKPQGTCARV IGQVLLSVRCK +N+ HA EALRRAKFKFPGRQKII SRKWGFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+ R P K+F
Sbjct:  119 FGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAF 215          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 1.512e-39
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPWKSF 308
            FGKPQGTCARV IGQVLLSVRCK +N+ HA EALRRAKFKFPGRQKII SRKWGFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+ R P K+F
Sbjct:  119 FGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAF 215          
The following BLAST results are available for this feature:
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL10_VITRI5.732e-4787.6360S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_SOLME3.145e-4586.1460S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL10_TOBAC4.541e-4486.6060S ribosomal protein L10 (Fragment) OS=Nicotiana ... [more]
RL10_EUPES2.944e-4385.5760S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL10_PINTA1.908e-4280.4160S ribosomal protein L10 OS=Pinus taeda GN=RPL10 ... [more]
RL102_ARATH2.110e-4181.4460S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL101_ARATH8.016e-4179.3860S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]
RL10_MAIZE1.158e-3981.4460S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=... [more]
RL102_ORYSJ1.512e-3980.4160S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ORYSI1.512e-3980.4160S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00567 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623476 ID=BQ623476; Name=BQ623476; organism=Citrus sinensis; type=EST; length=490bp
TGGAATGAGGGGTGCCTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTGTT
GCTATCGGGCAGGTCTTGCTTTCTGTCCGTTGCAAGGATAGTAACAGCCA
CCATGCTCAGGAGGCCCTTCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTC
AAAAGATTATTGTCAGCAGGAAATGGGGATTTACCAAGTTCAGCCGTGCT
GATTATCTGCGGTGGAAGTCGGAGAACAGGATTGTCCCAGATGGTGTGAA
TGCCAAGCTTCTCGGATGTCATGGTCCTTTGGCTCAACGTCAACCCTGGA
AGAGCTTTCCTGGAAGCAACAACCTAAGATATTTACTGTCTCAAAATAGC
AGAGCTGGGTCTACTGTCTAGTTTATTATTTTCCATTTCGTACCTTTTCT
CAGTTGAACTGGATTTCTCAAGTTGAAGTGACATGTTTCTTTGGTTTAAC
TATGTGATCCTTGCAGTTGTTTTAGTGATTTGCAATTTGC
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