BQ623479

Overview
NameBQ623479
Unique NameBQ623479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623479_ssr470 microsatellite BQ623479_ssr470:470..481. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13287 contig Csv1_Contig13287:104..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623479 vs. ExPASy Swiss-Prot
Match: ATP5E_IPOBA (ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 6.131e-26
Identity = 37/43 (86.05%), Postives = 42/43 (97.67%), Query Frame = 2
Query:   47 MASNAAVPFWRAAGMTYISYSNICANLVRNCLKEPYKTEALTR 175
            MASNAAVPFWRAAGMTYI+YSN+CAN+VRNCLKEPY+ EAL+R
Sbjct:    1 MASNAAVPFWRAAGMTYITYSNLCANMVRNCLKEPYRAEALSR 43          

HSP 2 Score: 52.7582 bits (125), Expect = 6.131e-26
Identity = 23/27 (85.19%), Postives = 23/27 (85.19%), Query Frame = 3
Query:  177 EKVHFSISKWTDGKPQKPTIRSDTPEE 257
            EKVHFS SKW DGKPQKP IRSDT EE
Sbjct:   44 EKVHFSFSKWVDGKPQKPAIRSDTGEE 70          
BLAST of BQ623479 vs. ExPASy Swiss-Prot
Match: ATP5E_MAIZE (ATP synthase subunit epsilon, mitochondrial OS=Zea mays PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.784e-21
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 2
Query:   50 ASNAAVPFWRAAGMTYISYSNICANLVRNCLKEPYKTEALTR 175
            A+ AAVPFWRAAGMTYI YSNICA LVRNCLKEP+K+EA +R
Sbjct:    3 ATTAAVPFWRAAGMTYIGYSNICAALVRNCLKEPFKSEAASR 44          

HSP 2 Score: 46.9802 bits (110), Expect = 1.784e-21
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 3
Query:  156 KPRPSLAEKVHFSISKWTDGKPQKPTIRSDTPE 254
            K   +  EKVHFSISKWTDGK +KPT+R+++ +
Sbjct:   38 KSEAASREKVHFSISKWTDGKQEKPTVRTESDD 70          
BLAST of BQ623479 vs. ExPASy Swiss-Prot
Match: ATP5E_ARATH (ATP synthase subunit epsilon, mitochondrial OS=Arabidopsis thaliana GN=At1g51650 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.479e-17
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 2
Query:   47 MASNAAVPFWRAAGMTYISYSNICANLVRNCLKEPYKTEALTR 175
            MASNAAVPFWRAAGMTYISYSNICAN+VRNCLKEP+K EALTR
Sbjct:    1 MASNAAVPFWRAAGMTYISYSNICANIVRNCLKEPHKAEALTR 43          
The following BLAST results are available for this feature:
BLAST of BQ623479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ATP5E_IPOBA6.131e-2686.05ATP synthase subunit epsilon, mitochondrial OS=Ipo... [more]
ATP5E_MAIZE1.784e-2180.95ATP synthase subunit epsilon, mitochondrial OS=Zea... [more]
ATP5E_ARATH3.479e-1793.02ATP synthase subunit epsilon, mitochondrial OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00570 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00570 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623479 ID=BQ623479; Name=BQ623479; organism=Citrus sinensis; type=EST; length=533bp
AACCCACAAAGAGAGAGCAAGAGAGAAAGAAGAAAGAAAAAAGCAAATGG
CTTCAAACGCAGCGGTGCCGTTTTGGAGAGCAGCGGGGATGACATACATA
TCGTACTCGAACATCTGTGCGAATCTGGTGAGGAATTGTCTCAAGGAACC
TTACAAAACCGAGGCCCTCACTCGCGGAGAAGGTTCACTTCTCTATCTCT
AAGTGGACCGATGGCAAACCCCAGAAACCCACTATTCGTTCTGATACTCC
GGAAGAATGAGTCCAATGGTAAATTCGTGTCCAAATGTCAGTGTGGAGTG
GAACAATGTGTGCGGCAAAGCTTTTTTCTGTTTCATTATTTGGTAGATTT
AATCTTATTGGGTCAGTAATGCATAAAACTCTCGAACAACATTTGCATTT
CTGTTTCTGCATGGCAAATGCATTTGTAATAATTTAACTGGCATTGACCT
ACTTTGGAAACTAGACTTATGTTTGTTTGTTCTTCATAGAAATTGATGGA
TATATATTTTCCAAAAAAAAAAAAAAAAAAAAA
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