BQ623487

Overview
NameBQ623487
Unique NameBQ623487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length226
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5674 contig Csv1_Contig5674:543..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623487 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.322e-14
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:    3 VGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 110
            +GFNIVDVLAWGSIGHIVAYYILATSSNGYDP FFG
Sbjct:  125 IGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG 160
[Close]
BLAST of BQ623487 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.642e-13
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:    3 VGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 110
            VGFN+VDVLAWGSIGHIVAYYILAT+SNGYDP FFG
Sbjct:  108 VGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 143
[Close]
BLAST of BQ623487 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.659e-13
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 3 
Query:    3 VGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 107
            VGFNIVDVLAWGSIGHIVAYYILAT+SNGYDP FF
Sbjct:  133 VGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 167
The following BLAST results are available for this feature:
BLAST of BQ623487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSAG_ARATH4.322e-1494.44Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU1.642e-1391.67Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL3.659e-1394.29Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00578 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00578 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623487 ID=BQ623487; Name=BQ623487; organism=Citrus sinensis; type=EST; length=226bp
CAGTTGGCTTTAACATTGTTGATGTTCTCGCTTGGGGTTCCATTGGCCAT
ATTGTCGCTTACTACATCTTGGCCACCTCCAGCAACGGCTATGATCCCAA
GTTCTTTGGTTGATTTTGTTATTTGTACTGTCTCTCTTTTGTCTCTTTTA
GTTTCTTAATTTCTCAAGTGTTGCGCTTTGTATAGTTAATAAATTTCCTA
GCATTTAATGGATGAGACCGATGATG
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