BQ623488

Overview
NameBQ623488
Unique NameBQ623488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623488 vs. ExPASy Swiss-Prot
Match: MSRA_FRAAN (Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 7.863e-21
Identity = 45/56 (80.36%), Postives = 52/56 (92.86%), Query Frame = 3
Query:    3 KQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 170
            KQ E KD+R +VTEILPAKRFYRAEEYHQQYLEKGGG G+KQSA+KGC++PI+CYG
Sbjct:  137 KQKEFKDKR-VVTEILPAKRFYRAEEYHQQYLEKGGGNGNKQSAQKGCNDPIKCYG 191          
BLAST of BQ623488 vs. ExPASy Swiss-Prot
Match: MSRA_SOLLC (Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.027e-20
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 3
Query:    3 KQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 170
            KQ E  D +KIVTEILPAKRFYRAEEYHQQYLEKGGGRG KQSA KGC++PIRCYG
Sbjct:  142 KQKEFMD-KKIVTEILPAKRFYRAEEYHQQYLEKGGGRGCKQSAAKGCNDPIRCYG 196          
BLAST of BQ623488 vs. ExPASy Swiss-Prot
Match: MSRA_LACSA (Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.175e-16
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 3
Query:   12 EMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 170
            + K  R +VTEILPAK+FYRAEEYHQQYL KGG  G +QS EKGC++PIRCYG
Sbjct:  207 QKKLNRTVVTEILPAKKFYRAEEYHQQYLAKGGRFGFRQSTEKGCNDPIRCYG 259          
BLAST of BQ623488 vs. ExPASy Swiss-Prot
Match: MSRA_BRANA (Peptide methionine sulfoxide reductase OS=Brassica napus GN=PMSR PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.004e-16
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 3
Query:   27 RKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 170
            RKIVTEILPA +FYRAE YHQQYL KGG  G  QSAEKGC++PIRCYG
Sbjct:  210 RKIVTEILPATKFYRAENYHQQYLAKGGRMGLSQSAEKGCNDPIRCYG 257          
BLAST of BQ623488 vs. ExPASy Swiss-Prot
Match: MSRA_ARATH (Peptide methionine sulfoxide reductase OS=Arabidopsis thaliana GN=PMSR PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 9.946e-16
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 3
Query:   27 RKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 170
            ++IVTEILPA +FYRAE YHQQYL KGG  G +QSAEKGC +PIRCYG
Sbjct:  211 KRIVTEILPATKFYRAENYHQQYLAKGGRMGLRQSAEKGCKDPIRCYG 258          
The following BLAST results are available for this feature:
BLAST of BQ623488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MSRA_FRAAN7.863e-2180.36Peptide methionine sulfoxide reductase OS=Fragaria... [more]
MSRA_SOLLC1.027e-2083.93Peptide methionine sulfoxide reductase (Fragment) ... [more]
MSRA_LACSA1.175e-1671.70Peptide methionine sulfoxide reductase OS=Lactuca ... [more]
MSRA_BRANA2.004e-1679.17Peptide methionine sulfoxide reductase OS=Brassica... [more]
MSRA_ARATH9.946e-1675.00Peptide methionine sulfoxide reductase OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00579 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00579 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623488 ID=BQ623488; Name=BQ623488; organism=Citrus sinensis; type=EST; length=349bp
CAAAGCAGTTGGAGATGAAGGATCAGAGGAAGATTGTAACAGAGATTCTT
CCTGCGAAGAGATTTTACAGAGCCGAGGAGTACCATCAGCAGTATCTTGA
AAAGGGTGGTGGCAGAGGCTCCAAGCAGTCTGCTGAAAAGGGCTGCGATG
AGCCCATCAGATGCTACGGTTGACGTTTGACCTTTTTATAGCTTGAACCT
TGTTTATTATCATATCTACGTTTCTTAATAACGAAAAGCGAACTCTTGTT
AAGCTTGCTTTGATTAATTACCATATAAACTGTGCGTTGCTTTCTGTGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC
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