BQ623512

Overview
NameBQ623512
Unique NameBQ623512
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623512_ssr332 microsatellite BQ623512_ssr332:332..346. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:655..1176. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.842e-44
Identity = 87/95 (91.58%), Postives = 89/95 (93.68%), Query Frame = 2
Query:    2 EVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 286
            EVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLAADPEK A LQLAEIKHARLAMVAFLGFAVQA  TGKGPLNNWATHLSDPLHTTI+DTF S
Sbjct:  195 EVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.560e-43
Identity = 85/95 (89.47%), Postives = 88/95 (92.63%), Query Frame = 2
Query:    2 EVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 286
            EVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLA+DP KKA LQLAEIKHARLAMV FLGFAVQA  TGKGPLNNWATHLSDPLHTTI+DTF S
Sbjct:  192 EVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.157e-28
Identity = 63/79 (79.75%), Postives = 71/79 (89.87%), Query Frame = 2
Query:    2 EVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWAT 238
            EVLV+GYIEFQRNSELDPEKR+YPGG +FDPLGLAADPEK  TL+LAEIKH+RLAMVAFL FA+QA  TGKGP++  AT
Sbjct:  196 EVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.133e-20
Identity = 53/95 (55.79%), Postives = 62/95 (65.26%), Query Frame = 2
Query:    2 EVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 283
            E L I + E QR  E DPEK+ YPGG F DPLG + DP K   L+L EIK+ RLAM+AF+GF V Q+   G GPL N ATHL+DP H  I D  I
Sbjct:  145 EFLAIAFAEQQRTMEKDPEKKKYPGGAF-DPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.794e-19
Identity = 50/91 (54.95%), Postives = 65/91 (71.43%), Query Frame = 2
Query:    2 EVLVIGYIEFQR-NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 271
            EV+++G  E+ R  + LD E +L+PGG F DPLGLA DPE+ A L++ EIK+ RLAM A LGF +QA VTG+GP+ N A HLSDP    +L
Sbjct:  178 EVVLLGGAEYYRITNGLDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.018e-18
Identity = 49/95 (51.58%), Postives = 62/95 (65.26%), Query Frame = 2
Query:    2 EVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 283
            E L I ++E QR+ E D EK+ YPGG F DPLG + DP K   L++ EIK+ RLA++A +GF V Q+   G GPL N ATHL+DP H  I D  I
Sbjct:  146 EFLAIAFVEHQRSMEKDSEKKKYPGGAF-DPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVII 239          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.470e-17
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 2
Query:    2 EVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKA-TLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWA 235
            EV+++G  EF RNSE +PEKR YPGG  FDPL LA++ E++A  L+ AEIKHARLAMV+F G+ VQA+ TG+G L + A
Sbjct:  191 EVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.920e-17
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 EVLVIGYIEFQRNSELD---PEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 256
            +VL++G +E  R + LD       LYPGG++FDPLGLA DP   A L++ EIK+ RLAM +  GF VQA+VTGKGPL N   HL DP+
Sbjct:  166 QVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPV 253          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.507e-17
Identity = 48/90 (53.33%), Postives = 62/90 (68.89%), Query Frame = 2
Query:    2 EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R +   P    E  LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  164 QVILMGAVEGYRVAGEGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252          
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.586e-17
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 2
Query:    2 EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 259
            +V+++G +E  R         +DP   LYPGG F DPLGLA DPE+ A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  163 QVILMGAVEGYRVAGGPLGEIVDP---LYPGGSF-DPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250          
The following BLAST results are available for this feature:
BLAST of BQ623512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB4A_ARATH1.842e-4491.58Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH1.560e-4389.47Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH3.157e-2879.75Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB121_HORVU4.133e-2055.79Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB26_ARATH7.794e-1954.95Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB11_SOLLC1.018e-1851.58Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB29_CHLRE1.470e-1759.49Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB23_HORVU1.920e-1753.41Chlorophyll a-b binding protein of LHCII type III,... [more]
CB21_SINAL2.507e-1753.33Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_APIGR5.586e-1751.09Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00603 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00603 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623512 ID=BQ623512; Name=BQ623512; organism=Citrus sinensis; type=EST; length=522bp
TGAGGTTTTGGTAATTGGCTACATTGAGTTCCAAAGAAACTCAGAGCTTG
ACCCGGAGAAGAGACTCTACCCGGGAGGAAAGTTTTTTGATCCTCTGGGC
TTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTCAATTGGCAGAGATCAA
GCACGCCCGCCTTGCCATGGTTGCATTCCTTGGCTTCGCTGTCCAAGCTG
TTGTCACCGGAAAAGGCCCTCTCAACAACTGGGCTACCCACTTGAGCGAT
CCTCTTCACACAACCATTCTTGACACCTTCATCTCTTAGATTTCTGGTGT
AGCCTCCAGTACTTGGCAGTTGGCACTATTGTTATTATTATTATTATATG
CGCCTATCTTGTAAAAAGAATTATAACATTTGACAGCTTAAGGGGAATGC
TATGGCTTCATATTTTGAAGTCATTTCATCTTTGCGTAACAAAAAAGAAA
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAACTTT
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