BQ623527

Overview
NameBQ623527
Unique NameBQ623527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623527_ssr515 microsatellite BQ623527_ssr515:515..526. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7023 contig Csv1_Contig7023:172..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M-type 4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 4.220e-42
Identity = 77/135 (57.04%), Postives = 97/135 (71.85%), Query Frame = 2
Query:   14 KFAEFKGLKVRPXXXXXXXXXXXXXXXXLRRGAQIVCEAQET---AVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            +F EF+GLK                   + RG +I CEAQ+T   AVEVP ++D+ WQ+ VL+S  PVLVEFWAPWCGPCRMIHPI+D+L+K + GK K YK+NTDESP+ A RYGIRS+PTV+IFK GEKKD++
Sbjct:   40 RFLEFRGLKSSRSLVTQSASLGANRRTRIARGGRIACEAQDTTAAAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSI 174          

HSP 2 Score: 27.335 bits (59), Expect = 4.220e-42
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 1
Query:  394 EERYSGLGAVPKSTLTTSIEKFL 462
            E++ S +GAVP+ TL  +IE+FL
Sbjct:  169 EKKDSIIGAVPRETLEKTIERFL 191          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: TRXM_BRANA (Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.426e-39
Identity = 65/104 (62.50%), Postives = 87/104 (83.65%), Query Frame = 2
Query:   98 LRRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            LRRG  I+CEAQ+TA  +P V D+TW+SLVL +  PV+V+FWAPWCGPC+MI PI++EL++QY GK+K +K+NTD+SP+   +YG+RSIPT+MIF  GEKKDT+
Sbjct:   57 LRRGG-IICEAQDTATGIPMVNDSTWESLVLKADEPVVVDFWAPWCGPCKMIDPIVNELAQQYTGKIKFFKLNTDDSPATPGKYGVRSIPTIMIFVKGEKKDTI 159          

HSP 2 Score: 31.5722 bits (70), Expect = 2.426e-39
Identity = 14/23 (60.87%), Postives = 20/23 (86.96%), Query Frame = 1
Query:  394 EERYSGLGAVPKSTLTTSIEKFL 462
            E++ + +GAVPK+TL TSI+KFL
Sbjct:  154 EKKDTIIGAVPKTTLATSIDKFL 176          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.805e-38
Identity = 65/98 (66.33%), Postives = 82/98 (83.67%), Query Frame = 2
Query:  116 IVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            ++  A+E   EV  V D++W  LV+ S +PVLV+FWAPWCGPCRMI PIIDEL+K+Y GK+KCYK+NTDESP+ AT+YGIRSIPTV+ FKNGE+KD+V
Sbjct:   58 VLLHAREAVNEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSV 155          

HSP 2 Score: 28.1054 bits (61), Expect = 5.805e-38
Identity = 11/23 (47.83%), Postives = 18/23 (78.26%), Query Frame = 1
Query:  394 EERYSGLGAVPKSTLTTSIEKFL 462
            E + S +GAVPK+TL+  +EK++
Sbjct:  150 ERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.805e-38
Identity = 66/104 (63.46%), Postives = 82/104 (78.85%), Query Frame = 2
Query:   98 LRRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            LR  ++  C+      EV    +  W S+VL S +PVLVEFWAPWCGPCRMI P+IDEL+K+YVGK+KC KVNTD+SP+IAT YGIRSIPTV++FKNGEKK++V
Sbjct:   50 LRPASRFACQCSNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESV 153          

HSP 2 Score: 28.8758 bits (63), Expect = 5.805e-38
Identity = 12/23 (52.17%), Postives = 19/23 (82.61%), Query Frame = 1
Query:  394 EERYSGLGAVPKSTLTTSIEKFL 462
            E++ S +GAVPK+TL T I+K++
Sbjct:  148 EKKESVIGAVPKTTLATIIDKYV 170          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: TRXM1_ARATH (Thioredoxin M-type 1, chloroplastic OS=Arabidopsis thaliana GN=At1g03680 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.555e-38
Identity = 65/104 (62.50%), Postives = 85/104 (81.73%), Query Frame = 2
Query:   98 LRRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            LRRG  ++CEAQ+TA  +P V D+TW SLVL +  PV V+FWAPWCGPC+MI PI++EL+++Y G+ K YK+NTDESP+   +YG+RSIPT+MIF NGEKKDT+
Sbjct:   61 LRRG--VICEAQDTATGIPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKMIDPIVNELAQKYAGQFKFYKLNTDESPATPGQYGVRSIPTIMIFVNGEKKDTI 162          

HSP 2 Score: 27.335 bits (59), Expect = 7.555e-38
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  394 EERYSGLGAVPKSTLTTSIEKFL 462
            E++ + +GAV K TL TSI KFL
Sbjct:  157 EKKDTIIGAVSKDTLATSINKFL 179          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: TRXM2_ARATH (Thioredoxin M-type 2, chloroplastic OS=Arabidopsis thaliana GN=At4g03520 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.669e-37
Identity = 70/139 (50.36%), Postives = 93/139 (66.91%), Query Frame = 2
Query:    2 SGRRKFA---EFKGLKVRPXXXXXXXXXXXXXXXXLRRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            S RR FA   E  GL++R                   R A +VCEAQET  ++  V D+TW SLVL +  PV+V+FWAPWCGPC+MI P++++L++ Y GK+K YK+NTDESP+   +YG+RSIPT+MIF  GEKKDT+
Sbjct:   31 SSRRMFAVLPESSGLRIRLSLSPASLTSIHQPRVSRLRRA-VVCEAQETTTDIQVVNDSTWDSLVLKATGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGKIKFYKLNTDESPNTPGQYGVRSIPTIMIFVGGEKKDTI 168          

HSP 2 Score: 31.187 bits (69), Expect = 1.669e-37
Identity = 13/23 (56.52%), Postives = 21/23 (91.30%), Query Frame = 1
Query:  394 EERYSGLGAVPKSTLTTSIEKFL 462
            E++ + +GAVPK+TLT+S++KFL
Sbjct:  163 EKKDTIIGAVPKTTLTSSLDKFL 185          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 8.163e-37
Identity = 59/102 (57.84%), Postives = 82/102 (80.39%), Query Frame = 2
Query:  104 RGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            R + +VC+A E   EV  V D++W+  VL+S  PV+V+FWAPWCGPC++I P+IDEL+K+Y GK+  YK+NTDE+P IAT+Y IRSIPTV+ FKNGE+K+++
Sbjct:   61 RYSSVVCKASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESI 162          

HSP 2 Score: 33.4982 bits (75), Expect = 8.163e-37
Identity = 16/23 (69.57%), Postives = 19/23 (82.61%), Query Frame = 1
Query:  394 EERYSGLGAVPKSTLTTSIEKFL 462
            E + S +GAVPKSTLT SIEK+L
Sbjct:  157 ERKESIIGAVPKSTLTDSIEKYL 179          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.498e-35
Identity = 62/103 (60.19%), Postives = 81/103 (78.64%), Query Frame = 2
Query:  101 RRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            RR ++ VC+ +    EV    +  W ++V+   SPVLVEFWAPWCGPCRMI P+IDEL+K YVGK+KC KVNTD+ P+IA+ YGIRSIPTV++FK+GEKK++V
Sbjct:   54 RRPSRFVCKCKNVVDEVIVADEKNWDNMVIACESPVLVEFWAPWCGPCRMIAPVIDELAKDYVGKIKCCKVNTDDCPNIASTYGIRSIPTVLMFKDGEKKESV 156          

HSP 2 Score: 28.8758 bits (63), Expect = 1.498e-35
Identity = 12/23 (52.17%), Postives = 19/23 (82.61%), Query Frame = 1
Query:  394 EERYSGLGAVPKSTLTTSIEKFL 462
            E++ S +GAVPK+TL T I+K++
Sbjct:  151 EKKESVIGAVPKTTLCTIIDKYI 173          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.319e-35
Identity = 59/97 (60.82%), Postives = 75/97 (77.32%), Query Frame = 2
Query:  119 VCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            VC+++    EV    +  W  LV+   +PVLVEFWAPWCGPCRMI P+IDEL+K Y GK+ C KVNTD+SP++A+ YGIRSIPTV+IFK GEKK++V
Sbjct:   51 VCQSKNAVDEVVVADEKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDELAKDYAGKITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEKKESV 147          

HSP 2 Score: 32.3426 bits (72), Expect = 4.319e-35
Identity = 14/23 (60.87%), Postives = 20/23 (86.96%), Query Frame = 1
Query:  394 EERYSGLGAVPKSTLTTSIEKFL 462
            E++ S +GAVPKSTLTT I+K++
Sbjct:  142 EKKESVIGAVPKSTLTTLIDKYI 164          
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 1.692e-30
Identity = 53/88 (60.23%), Postives = 74/88 (84.09%), Query Frame = 2
Query:  146 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 409
            E  AV D T++++VL+S  PVLV+FWAPWCGPCR+I P++DE++ +Y  KLKC K+NTDESP++A+ YGIRSIPT+M+FK G+K +T+
Sbjct:   35 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETI 122          

HSP 2 Score: 26.1794 bits (56), Expect = 1.692e-30
Identity = 9/17 (52.94%), Postives = 15/17 (88.24%), Query Frame = 1
Query:  412 LGAVPKSTLTTSIEKFL 462
            +GAVPK+T+  ++EK+L
Sbjct:  123 IGAVPKATIVQTVEKYL 139          
The following BLAST results are available for this feature:
BLAST of BQ623527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
TRXM4_ARATH4.220e-4257.04Thioredoxin M-type 4, chloroplastic OS=Arabidopsis... [more]
TRXM_BRANA2.426e-3962.50Thioredoxin M-type, chloroplastic OS=Brassica napu... [more]
TRXM_PEA5.805e-3866.33Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXM_ORYSJ5.805e-3863.46Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]
TRXM1_ARATH7.555e-3862.50Thioredoxin M-type 1, chloroplastic OS=Arabidopsis... [more]
TRXM2_ARATH1.669e-3750.36Thioredoxin M-type 2, chloroplastic OS=Arabidopsis... [more]
TRXM_SPIOL8.163e-3757.84Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
TRXM_WHEAT1.498e-3560.19Thioredoxin M-type, chloroplastic OS=Triticum aest... [more]
TRXM_MAIZE4.319e-3560.82Thioredoxin M-type, chloroplastic OS=Zea mays GN=T... [more]
TRXM_CHLRE1.692e-3060.23Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00618 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00618 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623527 ID=BQ623527; Name=BQ623527; organism=Citrus sinensis; type=EST; length=569bp
CTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCAGACCTG
TTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTCAGACTC
CGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGTTGAAGT
GCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACTCTGGAT
CACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGCCGGATG
ATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAAGCTAAA
ATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACTAGATATG
GAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAGAAGAAA
GATACAGTGGATTGGGTGCTGTTCCTAAATCCACTTTGACCACCAGCATA
GAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGAAACAG
GCTCTCTGTAGCATTTTGTTTGTTTGCCTTGTAGCTTACTATGCCTTGGG
TTAAGATACTTTGCTTTCC
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