C21834

Overview
NameC21834
Unique NameC21834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length332
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig907 contig Csv1_Contig907:118..450. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21834 vs. ExPASy Swiss-Prot
Match: PSBO_TOBAC (Oxygen-evolving enhancer protein 1, chloroplastic OS=Nicotiana tabacum GN=PSBO PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.266e-25
Identity = 60/91 (65.93%), Postives = 66/91 (72.53%), Query Frame = 1
Query:   22 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKACGVDSAGARISCSXNNDLKDLAQKCVDATKIAGFALXTSALVVSGAXAEGVQR 294
            MAASLQAAATLMQPTKVGV PA            VSKA GV+ A AR++CS   +LKDLAQK  DA K+AGFAL TSALVVSGA AEGV +
Sbjct:    1 MAASLQAAATLMQPTKVGVAPARNNLQLRSAQS-VSKAFGVEPAAARLTCSLQTELKDLAQKFTDAAKVAGFALATSALVVSGANAEGVPK 90          

HSP 2 Score: 30.8018 bits (68), Expect = 1.266e-25
Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  291 KRLTYDEIQSKTYM 332
            KRLT+DEIQSKTYM
Sbjct:   90 KRLTFDEIQSKTYM 103          
BLAST of C21834 vs. ExPASy Swiss-Prot
Match: PSBO_SOLTU (Oxygen-evolving enhancer protein 1, chloroplastic OS=Solanum tuberosum GN=PSBO PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.728e-25
Identity = 59/91 (64.84%), Postives = 65/91 (71.43%), Query Frame = 1
Query:   22 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKACGVDSAGARISCSXNNDLKDLAQKCVDATKIAGFALXTSALVVSGAXAEGVQR 294
            MAASLQAAATLMQPTKVG V A            VSKA G++ + +R+SCS   DLKD AQKC DA KIAGFAL TSALVVSGA AEGV +
Sbjct:    1 MAASLQAAATLMQPTKVGGVSARNNLQLRSSQS-VSKAFGLEPSASRLSCSLQTDLKDFAQKCTDAAKIAGFALATSALVVSGANAEGVPK 90          

HSP 2 Score: 30.8018 bits (68), Expect = 4.728e-25
Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  291 KRLTYDEIQSKTYM 332
            KRLT+DEIQSKTYM
Sbjct:   90 KRLTFDEIQSKTYM 103          
BLAST of C21834 vs. ExPASy Swiss-Prot
Match: PSBO_SOLLC (Oxygen-evolving enhancer protein 1, chloroplastic OS=Solanum lycopersicum GN=PSBO PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.298e-24
Identity = 56/91 (61.54%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   22 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKACGVDSAGARISCSXNNDLKDLAQKCVDATKIAGFALXTSALVVSGAXAEGVQR 294
            MAASLQAAATLMQPTKVGV               VSKA GV+    R++CS   ++K+LAQKC DA KIAGFAL TSALVVSGA AEGV +
Sbjct:    1 MAASLQAAATLMQPTKVGV----RNNLQLRSAQSVSKAFGVEQGSGRLTCSLQTEIKELAQKCTDAAKIAGFALATSALVVSGANAEGVPK 87          

HSP 2 Score: 32.3426 bits (72), Expect = 2.298e-24
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  291 KRLTYDEIQSKTYM 332
            KRLTYDEIQSKTYM
Sbjct:   87 KRLTYDEIQSKTYM 100          
BLAST of C21834 vs. ExPASy Swiss-Prot
Match: PSBO2_ARATH (Oxygen-evolving enhancer protein 1-2, chloroplastic OS=Arabidopsis thaliana GN=PSBO2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.530e-22
Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = 1
Query:   22 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKACGVDSAGARISCSXNNDLKDLAQKCVDATKIAGFALXTSALVVSGAXAEGVQR 294
            MA SLQAAAT +QP K+   P+            V K+ G+DS+ AR++CS ++DLKD A KC DA KIAGFAL TSALVVSGA AEG  +
Sbjct:    1 MATSLQAAATFLQPAKIAASPSRNVHLRSNQT--VGKSFGLDSSQARLTCSLHSDLKDFAGKCSDAAKIAGFALATSALVVSGAGAEGAPK 89          

HSP 2 Score: 32.3426 bits (72), Expect = 7.530e-22
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  291 KRLTYDEIQSKTYM 332
            KRLTYDEIQSKTYM
Sbjct:   89 KRLTYDEIQSKTYM 102          
BLAST of C21834 vs. ExPASy Swiss-Prot
Match: PSBO_PEA (Oxygen-evolving enhancer protein 1, chloroplastic OS=Pisum sativum GN=PSBO PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.658e-21
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   22 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKACGVDSAGARISCSXNNDLKDLAQKCVDATKIAGFALXTSALVVSGAXAEGVQR 294
            MAASLQAAATLMQPTK+                 VSKA G++  GA+++CS  +D K+LA KCV+A+KIAGFAL TSALVVSGA AEG  +
Sbjct:    1 MAASLQAAATLMQPTKL-----RSNTLQLKSNQSVSKAFGLEHYGAKVTCSLQSDFKELAHKCVEASKIAGFALATSALVVSGASAEGAPK 86          

HSP 2 Score: 29.6462 bits (65), Expect = 1.658e-21
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  291 KRLTYDEIQSKTYM 332
            KRLT+DEIQSKTY+
Sbjct:   86 KRLTFDEIQSKTYL 99          
BLAST of C21834 vs. ExPASy Swiss-Prot
Match: PSBO_FRIAG (Oxygen-evolving enhancer protein 1, chloroplastic OS=Fritillaria agrestis GN=PSBO PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.062e-20
Identity = 53/92 (57.61%), Postives = 66/92 (71.74%), Query Frame = 1
Query:   22 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKACGVDSAGA-RISCSXNNDLKDLAQKCVDATKIAGFALXTSALVVSGAXAEGVQR 294
            MA+SLQAAATL+ P KVG  PA            +SKA G D++ A R++CS N+DL+D+AQKC DA K+AGFAL TSALV+SGA AEGV +
Sbjct:    1 MASSLQAAATLI-PAKVGA-PARTHLRSNSH---LSKAFGFDNSTAGRLTCSINSDLRDIAQKCTDAAKLAGFALATSALVISGASAEGVPK 87          

HSP 2 Score: 30.8018 bits (68), Expect = 5.062e-20
Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  291 KRLTYDEIQSKTYM 332
            KRLT+DEIQSKTYM
Sbjct:   87 KRLTFDEIQSKTYM 100          
BLAST of C21834 vs. ExPASy Swiss-Prot
Match: PSBO_SPIOL (Oxygen-evolving enhancer protein 1, chloroplastic OS=Spinacia oleracea GN=PSBO PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.583e-20
Identity = 52/93 (55.91%), Postives = 61/93 (65.59%), Query Frame = 1
Query:   22 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKACGVDSA--GARISCSXNNDLKDLAQKCVDATKIAGFALXTSALVVSGAXAEGVQR 294
            MAASLQA+ T +QPTKV    A            V KA GV+SA  G R+S S  +DLK+LA KCVDATK+AG AL TSAL+ SGA AEG +R
Sbjct:    1 MAASLQASTTFLQPTKV----ASRNTLQLRSTQNVCKAFGVESASSGGRLSLSLQSDLKELANKCVDATKLAGLALATSALIASGANAEGGKR 89          

HSP 2 Score: 31.187 bits (69), Expect = 6.583e-20
Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  291 KRLTYDEIQSKTYM 332
            KRLTYDEIQSKTY+
Sbjct:   88 KRLTYDEIQSKTYL 101          
BLAST of C21834 vs. ExPASy Swiss-Prot
Match: PSBO1_ARATH (Oxygen-evolving enhancer protein 1-1, chloroplastic OS=Arabidopsis thaliana GN=PSBO1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.186e-19
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   22 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKACGVDSAGARISCSXNNDLKDLAQKCVDATKIAGFALXTSALVVSGAXAEGVQR 294
            MAASLQ+ AT +Q  K+   P+            V K+ G++++ AR++CS  +D KD   KC DA KIAGFAL TSALVVSGA AEG  +
Sbjct:    1 MAASLQSTATFLQSAKIATAPSRGSSHLRSTQA-VGKSFGLETSSARLTCSFQSDFKDFTGKCSDAVKIAGFALATSALVVSGASAEGAPK 90          

HSP 2 Score: 32.3426 bits (72), Expect = 3.186e-19
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  291 KRLTYDEIQSKTYM 332
            KRLTYDEIQSKTYM
Sbjct:   90 KRLTYDEIQSKTYM 103          
BLAST of C21834 vs. ExPASy Swiss-Prot
Match: PSBO_WHEAT (Oxygen-evolving enhancer protein 1, chloroplastic OS=Triticum aestivum GN=PSBO PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.117e-19
Identity = 49/91 (53.85%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   22 MAASLQAAATLMQPTKVGVVPAXXXXXXXXXXXXVSKACGVDSAGARISCSXNNDLKDLAQKCVDATKIAGFALXTSALVVSGAXAEGVQR 294
            MAASLQAAAT+M P K+G                V++A GVD AGARI+CS  +D++++A KC DA K+AGFAL TSAL+VSGA AEG  +
Sbjct:    1 MAASLQAAATVM-PAKIG-----GRASSARPSSHVARAFGVD-AGARITCSLQSDIREVASKCADAAKMAGFALATSALLVSGATAEGAPK 84          

HSP 2 Score: 30.8018 bits (68), Expect = 9.117e-19
Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  291 KRLTYDEIQSKTYM 332
            KRLT+DEIQSKTYM
Sbjct:   84 KRLTFDEIQSKTYM 97          
The following BLAST results are available for this feature:
BLAST of C21834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSBO_TOBAC1.266e-2565.93Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_SOLTU4.728e-2564.84Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_SOLLC2.298e-2461.54Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO2_ARATH7.530e-2254.95Oxygen-evolving enhancer protein 1-2, chloroplasti... [more]
PSBO_PEA1.658e-2157.14Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_FRIAG5.062e-2057.61Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_SPIOL6.583e-2055.91Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO1_ARATH3.186e-1948.35Oxygen-evolving enhancer protein 1-1, chloroplasti... [more]
PSBO_WHEAT9.117e-1953.85Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionC21834 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSO-26R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21834 ID=C21834; Name=C21834; organism=Citrus sinensis; type=EST; length=332bp
GCACAAGTGGTAGGGAGCAAGATGGCAGCCTCGTTACAAGCCGCAGCTAC
ACTGATGCAACCCACCAAGGTGGGTGTGGTACCCGCTCGCAGCAGCAGCC
TGCAGCTGAGGTCTTCACAGAGCGTTTCGAAGGCTTGTGGTGTCGACTCA
GCTGGTGCTAGGATCTCTTGCTCTNTGAATAATGACTTGAAGGATTTGGC
TCAGAAATGTGTTGATGCTACCAAGATCGCTGGCTTTGCCCTCGNCACTT
CTGCTCTCGTCGTTTCGGGAGCANGTGCTGAAGGTGTTCAAAGAGGCTAA
CCTATGATGAAATCCAGAGCAAGACATACATG
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