C21835

Overview
NameC21835
Unique NameC21835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length283
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9274 contig Csv1_Contig9274:878..1159. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21835 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.920e-39
Identity = 76/86 (88.37%), Postives = 78/86 (90.70%), Query Frame = 2
Query:    8 DATLMNIADNPTCVQLPGMYNKEENPRXPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRIDNXADXDIXKXXET 265
            +ATLMNIADNPT VQLPGMYNKEENPR PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DN AD DI K  +T
Sbjct:  251 NATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDT 336          
BLAST of C21835 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.067e-37
Identity = 73/82 (89.02%), Postives = 75/82 (91.46%), Query Frame = 2
Query:    8 DATLMNIADNPTCVQLPGMYNKEENPRXPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRIDNXADXDIXK 253
            +ATLMNIADNPT VQLPGMYNKEENPR PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DN  + DI K
Sbjct:  251 NATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVK 332          
BLAST of C21835 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 3.526e-37
Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 2
Query:    8 DATLMNIADNPTCVQLPGMYNKEENPRXPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRIDNXADXDIXKXXET 265
            +ATLMNIADNPT VQLPGMYNKE+NPR PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DN  D DI K  ++
Sbjct:  242 NATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDS 327          
BLAST of C21835 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.526e-37
Identity = 74/86 (86.05%), Postives = 76/86 (88.37%), Query Frame = 2
Query:    8 DATLMNIADNPTCVQLPGMYNKEENPRXPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRIDNXADXDIXKXXET 265
            +ATLMNIADNPT VQLPGMYNKEENPR PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DN A  DI K  +T
Sbjct:  251 NATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDT 336          
BLAST of C21835 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.899e-36
Identity = 71/86 (82.56%), Postives = 75/86 (87.21%), Query Frame = 2
Query:    8 DATLMNIADNPTCVQLPGMYNKEENPRXPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRIDNXADXDIXKXXET 265
            +ATLMNIAD PT VQLPGMYNKEENPR PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DN  D  + +  +T
Sbjct:  238 NATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDT 323          
BLAST of C21835 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 6.650e-36
Identity = 70/86 (81.40%), Postives = 75/86 (87.21%), Query Frame = 2
Query:    8 DATLMNIADNPTCVQLPGMYNKEENPRXPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRIDNXADXDIXKXXET 265
            +ATLMNIADNPT VQLPGMYNKEEN R PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D   + DI K  +T
Sbjct:  253 NATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDT 338          
BLAST of C21835 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.134e-35
Identity = 70/86 (81.40%), Postives = 75/86 (87.21%), Query Frame = 2
Query:    8 DATLMNIADNPTCVQLPGMYNKEENPRXPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRIDNXADXDIXKXXET 265
            +ATLMNIADNPT VQLPGMYNK+EN R PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DN  +  + K  +T
Sbjct:  255 NATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDT 340          
BLAST of C21835 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.481e-35
Identity = 70/86 (81.40%), Postives = 74/86 (86.05%), Query Frame = 2
Query:    8 DATLMNIADNPTCVQLPGMYNKEENPRXPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRIDNXADXDIXKXXET 265
            +ATLMNIADNPT VQLPGMYNKEENPR PIIVTGNDFSTLYAPLIRDGRM+KFYWAPTREDRIG+C GIFR D     DI K  +T
Sbjct:  248 NATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDT 333          
BLAST of C21835 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 1.935e-35
Identity = 69/86 (80.23%), Postives = 75/86 (87.21%), Query Frame = 2
Query:    8 DATLMNIADNPTCVQLPGMYNKEENPRXPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRIDNXADXDIXKXXET 265
            +ATLMNIADNPT VQLPGMYNKE+NPR PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D   +  + +  +T
Sbjct:  247 NATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDT 332          
BLAST of C21835 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.935e-35
Identity = 68/86 (79.07%), Postives = 75/86 (87.21%), Query Frame = 2
Query:    8 DATLMNIADNPTCVQLPGMYNKEENPRXPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRIDNXADXDIXKXXET 265
            +ATLMNIAD PT VQLPGMYNK ENPR PI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DN +D  + K  +T
Sbjct:  241 NATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 326          
The following BLAST results are available for this feature:
BLAST of C21835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA1_LARTR4.920e-3988.37Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR2.067e-3789.02Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ3.526e-3782.56Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO3.526e-3786.05Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU3.899e-3682.56Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU6.650e-3681.40Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC1.134e-3581.40Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.481e-3581.40Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE1.935e-3580.23Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.935e-3579.07Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC21835 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSJ-11R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21835 ID=C21835; Name=C21835; organism=Citrus sinensis; type=EST; length=283bp
GGCACGAGACGCCACACTCATGAACATTGCTGATAACCCAACTTGTGTCC
AACTCCCTGGTATGTACAACAAGGAGGAGAACCCCCGTNTCCCAATCATA
GTCACCGGTAATGACTTCTCAACATTGTATGCTCCTCTCATCCGTGATGG
TCGTATGGAGAAATTCTACTGGGCACCTACAAGGGAGGACCGTATTGGTG
TGTGCAAGGGTATCTTCAGGATTGACAATNNGGCTGATTNCGACATTNTC
AAGNTTNTTGAAACTTCCCGGNCAATCCATTGG
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