C21837

Overview
NameC21837
Unique NameC21837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length223
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6745 contig Csv1_Contig6745:1009..1231. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of C21837 vs. ExPASy Swiss-Prot
Match: ALF_MAIZE (Fructose-bisphosphate aldolase, cytoplasmic isozyme OS=Zea mays PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.409e-15
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:   48 MSCFKGKYADELIKNAAYIGTPGKGILAADESTGTIGKXLSSIN 179
            MS + GKY DELIKNAAYIGTPGKGILAADESTGTIGK LSSIN
Sbjct:    1 MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRLSSIN 44
[Close]
BLAST of C21837 vs. ExPASy Swiss-Prot
Match: ALF2_PEA (Fructose-bisphosphate aldolase, cytoplasmic isozyme 2 OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.195e-14
Identity = 39/44 (88.64%), Postives = 39/44 (88.64%), Query Frame = 3 
Query:   48 MSCFKGKYADELIKNAAYIGTPGKGILAADESTGTIGKXLSSIN 179
            MS FK KY DELI NAAYIGTPGKGILAADESTGTIGK LSSIN
Sbjct:    1 MSHFKSKYHDELIANAAYIGTPGKGILAADESTGTIGKRLSSIN 44
[Close]
BLAST of C21837 vs. ExPASy Swiss-Prot
Match: ALF1_PEA (Fructose-bisphosphate aldolase, cytoplasmic isozyme 1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.195e-14
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 3 
Query:   48 MSCFKGKYADELIKNAAYIGTPGKGILAADESTGTIGKXLSSIN 179
            MS F GKYADELIKNA YI TPGKGILAADESTGTIGK L+SIN
Sbjct:    1 MSAFVGKYADELIKNAKYIATPGKGILAADESTGTIGKRLASIN 44
[Close]
BLAST of C21837 vs. ExPASy Swiss-Prot
Match: ALF_ORYSJ (Fructose-bisphosphate aldolase cytoplasmic isozyme OS=Oryza sativa subsp. japonica GN=FBA PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.450e-14
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 3 
Query:   48 MSCFKGKYADELIKNAAYIGTPGKGILAADESTGTIGKXLSSIN 179
            MS + GKY DELIKNAAYIGTPGKGILAADESTGTIGK  +SIN
Sbjct:    1 MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASIN 44
[Close]
BLAST of C21837 vs. ExPASy Swiss-Prot
Match: ALF_CICAR (Fructose-bisphosphate aldolase, cytoplasmic isozyme OS=Cicer arietinum GN=ALDC PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.118e-14
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 3 
Query:   48 MSCFKGKYADELIKNAAYIGTPGKGILAADESTGTIGKXLSSIN 179
            MS FK KY DELI NAAYIGTPGKGILAADESTGTIGK L+SIN
Sbjct:    1 MSNFKSKYHDELIANAAYIGTPGKGILAADESTGTIGKRLASIN 44
[Close]
BLAST of C21837 vs. ExPASy Swiss-Prot
Match: ALF_SPIOL (Fructose-bisphosphate aldolase, cytoplasmic isozyme OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.702e-12
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 3 
Query:   48 MSCFKGKYADELIKNAAYIGTPGKGILAADESTGTIGKXLSSIN 179
            M+ ++GKYADELI NA+YI TPGK ILAADESTGTIGK   SIN
Sbjct:    1 MTAYRGKYADELIANASYIATPGKVILAADESTGTIGKRFPSIN 44
The following BLAST results are available for this feature:
BLAST of C21837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ALF_MAIZE8.409e-1588.64Fructose-bisphosphate aldolase, cytoplasmic isozym... [more]
ALF2_PEA3.195e-1488.64Fructose-bisphosphate aldolase, cytoplasmic isozym... [more]
ALF1_PEA3.195e-1486.36Fructose-bisphosphate aldolase, cytoplasmic isozym... [more]
ALF_ORYSJ5.450e-1484.09Fructose-bisphosphate aldolase cytoplasmic isozyme... [more]
ALF_CICAR7.118e-1486.36Fructose-bisphosphate aldolase, cytoplasmic isozym... [more]
ALF_SPIOL8.702e-1275.00Fructose-bisphosphate aldolase, cytoplasmic isozym... [more]
back to top
Properties
Property NameValue
Genbank descriptionC21837 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSI-11R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21837 ID=C21837; Name=C21837; organism=Citrus sinensis; type=EST; length=223bp
GGCACGAGCTCTAACAAAACAAATTTTCTATCTTCAAGTAGATCACCATG
TCTTGCTTCAAGGGCAAATACGCCGATGAGCTCATTAAAAACGCTGCCTA
CATTGGCACCCCTGGAAAGGGTATCCTTGCTGCTGATGAGTCAACAGGCA
CCATTGGCAAGCNTCTATCCAGCATCAATNTTGAGAATNTTGAGGCAAAC
AGGCGTNCTCTCCGNGAGCTCCT
back to top