C21839

Overview
NameC21839
Unique NameC21839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:326..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 9.642e-40
Identity = 74/81 (91.36%), Postives = 77/81 (95.06%), Query Frame = 1
Query:   61 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            GK+KIGINGFGRIGRLVARV L RDDVELVAVNDPFITTDYMTYMFKYD+ HGQWKHHELKVKD+KTLLFGEKPVTVFG R
Sbjct:    3 GKIKIGINGFGRIGRLVARVALARDDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHHELKVKDEKTLLFGEKPVTVFGCR 83          

HSP 2 Score: 25.7942 bits (55), Expect = 9.642e-40
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 3
Query:  291 FRC*DPEEXHWAXT*AEYVV 350
            F C +PEE  W  T AE+VV
Sbjct:   80 FGCRNPEEIPWGETGAEFVV 99          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.132e-39
Identity = 76/80 (95.00%), Postives = 77/80 (96.25%), Query Frame = 1
Query:   64 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            K+KIGINGFGRIGRLVARV LQRDDVELVAVNDPFITTDYMTYMFKYDS HGQWKHHELKVKD KTLLFGEKPVTVFGVR
Sbjct:    5 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDSKTLLFGEKPVTVFGVR 84          

HSP 2 Score: 22.3274 bits (46), Expect = 2.132e-39
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            +PEE  W  T AE+VV
Sbjct:   85 NPEEIPWGETGAEFVV 100          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.769e-38
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            M KVKIGINGFGRIGRLVARVILQ DD ELVA+NDPFITTDYMTYMFKYDS HGQWKHHELKVKD+KTLLFGE+PVTVFG R
Sbjct:    1 MAKVKIGINGFGRIGRLVARVILQSDDCELVAINDPFITTDYMTYMFKYDSVHGQWKHHELKVKDEKTLLFGERPVTVFGNR 82          

HSP 2 Score: 22.7126 bits (47), Expect = 1.769e-38
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            +PEE  W  T A+YVV
Sbjct:   83 NPEEIPWGQTGADYVV 98          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.885e-38
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            M K+KIGINGFGRIGRLVARV LQRDDVELVAVNDPFI+ +YMTYMFKYDS HGQWKHHELK KDDKTLLFGEKPVTVFG+R
Sbjct:    1 MAKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISVEYMTYMFKYDSVHGQWKHHELKAKDDKTLLFGEKPVTVFGIR 82          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 4.200e-38
Identity = 73/80 (91.25%), Postives = 79/80 (98.75%), Query Frame = 1
Query:   64 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            K+KIGINGFGRIGRLVARVILQR+DVELVAVNDPFITT+YMTYMFKYDS HGQWKH+ELKVKD+KTLLFGEKPVTVFG+R
Sbjct:    5 KIKIGINGFGRIGRLVARVILQRNDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVTVFGIR 84          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 4.200e-38
Identity = 71/80 (88.75%), Postives = 79/80 (98.75%), Query Frame = 1
Query:   64 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            K++IGINGFGRIGRLVARV+LQRDDVELVAVNDPFITT+YMTYMFKYDS HGQWKH+ELK+KD+KTLLFGEKPVTVFG+R
Sbjct:    5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELKIKDEKTLLFGEKPVTVFGIR 84          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.555e-37
Identity = 71/82 (86.59%), Postives = 77/82 (93.90%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            MGK+KIGINGFGRIGRLVARV LQ DDVELVAVNDPFITT+YMTYMFKYD+ HG WKH ++K+KDDKTLLFGEKPVTVFGVR
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTEYMTYMFKYDTVHGHWKHSDIKLKDDKTLLFGEKPVTVFGVR 82          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.511e-37
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            M K+KIGINGFGRIGRLVARV LQ DDVELVAVNDPFI+TDYMTYMFKYD+ HGQWKHHE+KVKD KTLLFGEK V VFG R
Sbjct:    1 MAKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFISTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCR 82          

HSP 2 Score: 25.409 bits (54), Expect = 5.511e-37
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:  291 FRC*DPEEXHWAXT*AEYVV 350
            F C +PEE  W    AEYVV
Sbjct:   79 FGCRNPEEIPWGSVGAEYVV 98          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.921e-37
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            M  +KIGINGFGRIGRLVARV LQRDDVELVAVNDPFI+TDYMTYMFKYDS HG WKHHELKVKD+KTLLFGEKPV VFG R
Sbjct:    1 MAPIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGAWKHHELKVKDEKTLLFGEKPVVVFGRR 82          
BLAST of C21839 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.218e-36
Identity = 69/82 (84.15%), Postives = 76/82 (92.68%), Query Frame = 1
Query:   58 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSXHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 303
            MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+ HGQWKH ++K+KD KTLL GEKPVTVFG+R
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIR 82          

HSP 2 Score: 22.3274 bits (46), Expect = 1.218e-36
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  303 DPEEXHWAXT*AEYVV 350
            +P+E  WA   AEYVV
Sbjct:   83 NPDEIPWAEAGAEYVV 98          
The following BLAST results are available for this feature:
BLAST of C21839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
G3PC_RANAC9.642e-4091.36Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAGLI2.132e-3995.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU1.769e-3890.24Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_PETHY1.885e-3889.02Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL4.200e-3891.25Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH4.200e-3888.75Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PX_HORVU3.555e-3786.59Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PE_MAIZE5.511e-3785.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ANTMA7.921e-3787.80Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSJ1.218e-3684.15Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC21839 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSI-25R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21839 ID=C21839; Name=C21839; organism=Citrus sinensis; type=EST; length=363bp
GGCACGAGCAACTTTNTTCACCACTCTTTCACCGCTCAATTTCATCTCTC
GAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTG
GTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTT
GCTGTTAATGATCCCTTTATCACAACCGATTACATGACATACATGTTTAA
GTACGACAGTNTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGG
ACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTT
AGGACCCAGAGGAGTNCCATTGGGCTNAGACTTGAGCCGAGTATGTTGTG
GGTCGACTTGAGC
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