C21840

Overview
NameC21840
Unique NameC21840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length261
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4907 contig Csv1_Contig4907:644..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_PETHY (Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.567e-40
Identity = 76/85 (89.41%), Postives = 81/85 (95.29%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MISAF C HDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKP+SD+PSVV+KYM KELE+EKFITH VPFSEINKA
Sbjct:  280 AMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPKSDIPSVVDKYMKKELELEKFITHQVPFSEINKA 364          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_ARATH (Alcohol dehydrogenase class-P OS=Arabidopsis thaliana GN=ADH1 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 5.954e-40
Identity = 74/85 (87.06%), Postives = 80/85 (94.12%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MI AF C HDGWGVAVLVGVP+KDDAFKTHPMN LNERTLKGTFFGNYKP++D+P VVEKYMNKELE+EKFITHTVPFSEINKA
Sbjct:  277 AMIQAFECVHDGWGVAVLVGVPSKDDAFKTHPMNFLNERTLKGTFFGNYKPKTDIPGVVEKYMNKELELEKFITHTVPFSEINKA 361          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_SOLTU (Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.732e-39
Identity = 74/85 (87.06%), Postives = 81/85 (95.29%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MISAF C HDGWGVAVLVGVP+K+  FKTHPMNLLNERTLKGTFFGNYKPRSD+PSVVEKYMNKELE+EKFITHT+PF+EINKA
Sbjct:  278 AMISAFECVHDGWGVAVLVGVPHKEAVFKTHPMNLLNERTLKGTFFGNYKPRSDIPSVVEKYMNKELELEKFITHTLPFAEINKA 362          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_PEA (Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.955e-39
Identity = 74/85 (87.06%), Postives = 80/85 (94.12%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MISAF C HDGWGVAVLVGVP+KDDAFKTHPMN LNERTLKGTF+GNYKPR+DLP+VVEKYM  ELE+EKFITHTVPFSEINKA
Sbjct:  278 AMISAFECVHDGWGVAVLVGVPSKDDAFKTHPMNFLNERTLKGTFYGNYKPRTDLPNVVEKYMKGELELEKFITHTVPFSEINKA 362          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH3_SOLTU (Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=ADH3 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.040e-39
Identity = 73/85 (85.88%), Postives = 80/85 (94.12%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MISAF C HDGWGVAVLVGVP+K+  FKTHPMN LNERTLKGTFFGNYKPRSD+PSVVEKYMNKELE+EKFITHT+PF+EINKA
Sbjct:  278 AMISAFECVHDGWGVAVLVGVPHKEAVFKTHPMNFLNERTLKGTFFGNYKPRSDIPSVVEKYMNKELELEKFITHTLPFAEINKA 362          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH2_SOLTU (Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.040e-39
Identity = 73/85 (85.88%), Postives = 80/85 (94.12%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MISAF C HDGWGVAVLVGVP+K+  FKTHPMN LNERTLKGTFFGNYKPRSD+PSVVEKYMNKELE+EKFITHT+PF+EINKA
Sbjct:  278 AMISAFECVHDGWGVAVLVGVPHKEAVFKTHPMNFLNERTLKGTFFGNYKPRSDIPSVVEKYMNKELELEKFITHTLPFAEINKA 362          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH2_SOLLC (Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN=ADH2 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 4.267e-38
Identity = 71/85 (83.53%), Postives = 79/85 (92.94%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MISAF C HDGWGVAVLVGVP+K+  FKTHP+N LNERTLKGTFFGNYKPRSD+P VVEKYMNKELE+EKFITHT+PF+EINKA
Sbjct:  278 AMISAFECVHDGWGVAVLVGVPHKEAVFKTHPLNFLNERTLKGTFFGNYKPRSDIPCVVEKYMNKELELEKFITHTLPFAEINKA 362          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH1_TRIRP (Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.267e-38
Identity = 71/85 (83.53%), Postives = 79/85 (92.94%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MISAF C HDGWGVAVLVGVP KDDAFKTHPMN LNERTLKGTF+GNYKPR+DLP+VVE+YM  ELE+EKFITH++PFSEINKA
Sbjct:  278 AMISAFECVHDGWGVAVLVGVPKKDDAFKTHPMNFLNERTLKGTFYGNYKPRTDLPNVVEQYMKGELELEKFITHSIPFSEINKA 362          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH_MALDO (Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.505e-38
Identity = 72/85 (84.71%), Postives = 78/85 (91.76%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MISAF C HDGWGVAVLVGVP+KD  FKTHP+N LNERTLKGTFFGNYK R+D+PSVVEKYMNKELE+EKFITH VPFSEINKA
Sbjct:  278 AMISAFECVHDGWGVAVLVGVPHKDAVFKTHPVNFLNERTLKGTFFGNYKTRTDIPSVVEKYMNKELELEKFITHKVPFSEINKA 362          
BLAST of C21840 vs. ExPASy Swiss-Prot
Match: ADH_FRAAN (Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 3.612e-37
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 1
Query:    7 SMISAFXCXHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKA 261
            +MI AF C HDGWGVAVLVGVP+KD  F THPMN LNERTLKGTFFGNYKPR+D+PSVVEKYMNKELEV+KFITH +PFS+INKA
Sbjct:  278 AMIPAFECVHDGWGVAVLVGVPHKDAVFTTHPMNFLNERTLKGTFFGNYKPRTDIPSVVEKYMNKELEVDKFITHQLPFSQINKA 362          
The following BLAST results are available for this feature:
BLAST of C21840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
ADH1_PETHY1.567e-4089.41Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1... [more]
ADH1_ARATH5.954e-4087.06Alcohol dehydrogenase class-P OS=Arabidopsis thali... [more]
ADH1_SOLTU1.732e-3987.06Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=AD... [more]
ADH1_PEA2.955e-3987.06Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1[more]
ADH3_SOLTU5.040e-3985.88Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=AD... [more]
ADH2_SOLTU5.040e-3985.88Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=AD... [more]
ADH2_SOLLC4.267e-3883.53Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN... [more]
ADH1_TRIRP4.267e-3883.53Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH... [more]
ADH_MALDO9.505e-3884.71Alcohol dehydrogenase OS=Malus domestica GN=ADH PE... [more]
ADH_FRAAN3.612e-3782.35Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH ... [more]

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Properties
Property NameValue
Genbank descriptionC21840 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSG-21R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21840 ID=C21840; Name=C21840; organism=Citrus sinensis; type=EST; length=261bp
GGCACGAGCATGATTTCAGCATTTNANTGCNTTCACGATGGTTGGGGTGT
TGCTGTGCTTGTGGGTGTGCCAAACAAAGATGATGCATTCAAGACTCATC
CCATGAATCTCCTTAATGAGAGGACTCTTAAGGGTACCTTCTTTGGCAAC
TACAAACCTCGCTCTGATCTTCCTTCTGTTGTTGAAAAATACATGAACAA
GGAGTTGGAGGTCGAGAAATTCATCACTCACACTGTGCCCTTCTCGGAGA
TAAACAAGGCA
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