C21854

Overview
NameC21854
Unique NameC21854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9695 contig Csv1_Contig9695:269..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC2_ORYSJ (Rac-like GTP-binding protein 2 OS=Oryza sativa subsp. japonica GN=RAC2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.776e-38
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFLR 244
            + CMLI YTSNKFPTDYIPTVFDNFSAN +VDG+IVNLGLWDTAGQEDYSRLRPLSYRGADIF LAFSLISRASYE  L+
Sbjct:   20 KTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLK 99

HSP 2 Score: 32.3426 bits (72), Expect = 3.776e-38
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            NVLKKWMPELRRF
Sbjct:   96 NVLKKWMPELRRF 108
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC7_ARATH (Rac-like GTP-binding protein ARAC7 OS=Arabidopsis thaliana GN=ARAC7 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.923e-38
Identity = 70/80 (87.50%), Postives = 73/80 (91.25%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFLR 244
            + CMLI YTSNKFPTDYIPTVFDNFSAN AVDG IVNLGLWDTAGQEDYSRLRPLSYRGADIF LAFSLIS+ASYE  L+
Sbjct:   19 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLK 98

HSP 2 Score: 32.3426 bits (72), Expect = 4.923e-38
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            NVLKKWMPELRRF
Sbjct:   95 NVLKKWMPELRRF 107
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC1_ORYSJ (Rac-like GTP-binding protein 1 OS=Oryza sativa subsp. japonica GN=RAC1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.410e-36
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + CMLI YT NKFPTDYIPTVFDNFSAN +VDGS+VNLGLWDTAGQEDYSRLRPLSYRGAD+F L+FSLISRASYE
Sbjct:   23 KTCMLICYTCNKFPTDYIPTVFDNFSANVSVDGSVVNLGLWDTAGQEDYSRLRPLSYRGADVFILSFSLISRASYE 98

HSP 2 Score: 30.0314 bits (66), Expect = 4.410e-36
Identity = 12/13 (92.31%), Postives = 12/13 (92.31%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            NV KKWMPELRRF
Sbjct:   99 NVQKKWMPELRRF 111
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC4_ORYSJ (Rac-like GTP-binding protein 4 OS=Oryza sativa subsp. japonica GN=RAC4 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.371e-34
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFLR 244
            + CMLI YTSNKFPTDY+PTVFDNFSAN  VDG+ VNLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSL+SRASYE  ++
Sbjct:   21 KTCMLICYTSNKFPTDYVPTVFDNFSANVVVDGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVMK 100

HSP 2 Score: 25.7942 bits (55), Expect = 1.371e-34
Identity = 8/13 (61.54%), Postives = 12/13 (92.31%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            NV+KKW+PEL+ +
Sbjct:   97 NVMKKWLPELQHY 109
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC3_ORYSJ (Rac-like GTP-binding protein 3 OS=Oryza sativa subsp. japonica GN=RAC3 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 6.694e-34
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFLR 244
            + CMLI YTSNKFPTDYIPTVFDNFSAN  VD + VNLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSL+SRASYE  ++
Sbjct:   21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVVDSTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENIMK 100

HSP 2 Score: 25.0238 bits (53), Expect = 6.694e-34
Identity = 7/13 (53.85%), Postives = 12/13 (92.31%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            N++KKW+PEL+ +
Sbjct:   97 NIMKKWIPELQHY 109
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC9_GOSHI (Rac-like GTP-binding protein RAC9 OS=Gossypium hirsutum GN=RAC9 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.736e-34
Identity = 65/76 (85.53%), Postives = 69/76 (90.79%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + CMLI YTSN FPTDY+PTVFDNFSAN  VDGS VNLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSLISRASYE
Sbjct:   19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYE 94

HSP 2 Score: 25.0238 bits (53), Expect = 8.736e-34
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            NV KKW+PELR +
Sbjct:   95 NVHKKWIPELRHY 107
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC10_ARATH (Rac-like GTP-binding protein ARAC10 OS=Arabidopsis thaliana GN=ARAC10 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.136e-33
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFLR 244
            + CMLI YTSNKFPTDYIPTVFDNFSAN  V+G+ VNLGLWDTAGQEDY+RLRPLSYRGAD+F L+FSL+SRASYE   +
Sbjct:   21 KTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLSFSLVSRASYENVFK 100

HSP 2 Score: 25.7942 bits (55), Expect = 1.136e-33
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            NV KKW+PEL+ F
Sbjct:   97 NVFKKWIPELQHF 109
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC13_GOSHI (Rac-like GTP-binding protein RAC13 OS=Gossypium hirsutum GN=RAC13 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.138e-33
Identity = 64/80 (80.00%), Postives = 70/80 (87.50%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYETFLR 244
            + CMLI YTSN FPTDY+PTVFDNFSAN  VDGS VNLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSLIS+ASYE   +
Sbjct:   19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIYK 98

HSP 2 Score: 25.409 bits (54), Expect = 1.138e-33
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            N+ KKW+PELR +
Sbjct:   95 NIYKKWIPELRHY 107
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC2_LOTJA (Rac-like GTP-binding protein RAC2 OS=Lotus japonicus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.482e-33
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + CMLI YTSN FPTDY+PTVFDNFSAN  VDGS VNLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSL+SRASYE
Sbjct:   19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYE 94

HSP 2 Score: 25.0238 bits (53), Expect = 1.482e-33
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            N+ KKW+PELR +
Sbjct:   95 NISKKWIPELRHY 107
[Close]
BLAST of C21854 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.482e-33
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 2 
Query:    5 RACMLIXYTSNKFPTDYIPTVFDNFSANXAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFXLAFSLISRASYE 232
            + CMLI YTSN FPTDY+PTVFDNFSAN  VDGS VNLGLWDTAGQEDY+RLRPLSYRGAD+F LAFSLIS+ASYE
Sbjct:   19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYE 94

HSP 2 Score: 25.409 bits (54), Expect = 1.482e-33
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:  232 NVLKKWMPELRRF 270
            NV KKW+PELR +
Sbjct:   95 NVSKKWIPELRHY 107
The following BLAST results are available for this feature:
BLAST of C21854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
RAC2_ORYSJ3.776e-3887.50Rac-like GTP-binding protein 2 OS=Oryza sativa sub... [more]
RAC7_ARATH4.923e-3887.50Rac-like GTP-binding protein ARAC7 OS=Arabidopsis ... [more]
RAC1_ORYSJ4.410e-3686.84Rac-like GTP-binding protein 1 OS=Oryza sativa sub... [more]
RAC4_ORYSJ1.371e-3480.00Rac-like GTP-binding protein 4 OS=Oryza sativa sub... [more]
RAC3_ORYSJ6.694e-3480.00Rac-like GTP-binding protein 3 OS=Oryza sativa sub... [more]
RAC9_GOSHI8.736e-3485.53Rac-like GTP-binding protein RAC9 OS=Gossypium hir... [more]
RAC10_ARATH1.136e-3378.75Rac-like GTP-binding protein ARAC10 OS=Arabidopsis... [more]
RAC13_GOSHI1.138e-3380.00Rac-like GTP-binding protein RAC13 OS=Gossypium hi... [more]
RAC2_LOTJA1.482e-3384.21Rac-like GTP-binding protein RAC2 OS=Lotus japonic... [more]
RAC5_ORYSJ1.482e-3384.21Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionC21854 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSN-28R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21854 ID=C21854; Name=C21854; organism=Citrus sinensis; type=EST; length=282bp
GGCACGAGCATGTATGCTCATTTNTTACACAAGTAACAAGTTCCCCACTG
ATTACATACCCACAGTGTTTGATAATTTCAGTGCCAATNTTGCTGTTGAT
GGTAGTATTGTGAACCTGGGCTTATGGGATACTGCAGGGCAGGAAGATTA
TAGCAGGTTGAGGCCACTGAGTTACAGAGGTGCAGACATTTTTNTNCTGG
CTTTCTCATTAATTAGTAGGGCAAGTTATGAAACGTTCTTAAGAAGTGGA
TGCCTGAACTTCGACGNTTCGACCAATGTACC
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