C21856

Overview
NameC21856
Unique NameC21856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length289
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3801 contig Csv1_Contig3801:497..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of C21856 vs. ExPASy Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.641e-13
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 2 
Query:    5 REPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 109
            R+PKGPKPGFMVEG TLETVTPIPYDVVNDLKGGY
Sbjct:  130 RQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
[Close]
BLAST of C21856 vs. ExPASy Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.641e-13
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 2 
Query:    5 REPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 109
            R+PKGPKPGFMVEG TLETVTPIPYDVVNDLKGGY
Sbjct:  130 RQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
The following BLAST results are available for this feature:
BLAST of C21856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RL212_ARATH1.641e-1394.2960S ribosomal protein L21-2 OS=Arabidopsis thalian... [more]
RL211_ARATH1.641e-1394.2960S ribosomal protein L21-1 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC21856 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSJ-6R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21856 ID=C21856; Name=C21856; organism=Citrus sinensis; type=EST; length=289bp
GGCACGAGAGCCAAAGGGCCCTAAACCAGGTTTCATGGTGGAAGGTGCAA
CATTGGAAACTGTCACTCCTATTCCTTATGATGTCGTCAATGATCTTAAG
GGTGGTTACTAGGTTATCTTTTTGGTATTGTTGCTGTTTTNTTACTTGTT
GCAGACTTTTCTGGACATGGTCTTATTTGGATGTATTTNCATCCTTATTA
GTTTTGTTTTTGGAGAGGAACTGCAATTGCAGAGATGTTTATTTTTAATC
TTCATTTTATATTAGAACAAGAGATGTTTTCCGAAAAAA
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