C21861

Overview
NameC21861
Unique NameC21861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length221
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:151..370. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of C21861 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.136e-11
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   58 MSDTCGNCDCXDRSQXVKKGSSYAVTFVETDLSFVSTVFVMDVQAAETEGNCK 216
            MSDTCGNCDC D++Q VKKGSSY    +ET+ S ++   VMD  AAE +G CK
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMTV--VMDAPAAENDGKCK 51
The following BLAST results are available for this feature:
BLAST of C21861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MT3_CARPA1.136e-1158.49Metallothionein-like protein type 3 OS=Carica papa... [more]
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Properties
Property NameValue
Genbank descriptionC21861 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSG-35R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21861 ID=C21861; Name=C21861; organism=Citrus sinensis; type=EST; length=221bp
GGCACGAGAGAGCCCTCTNTTTCCAGTTTTAAATTCCAAGTTCTAAGCTC
AATCAACATGTCGGACACCTGCGGCAACTGCGACTGCNCTGACAGGAGCC
AGTNTGTGAAGAAGGGAAGCAGCTATGCNGTGACCTTCGTCGAGACTGAC
TTGAGCTTTGTCAGCACCGTTTTTGTCATGGACGTTCAGGCTGCTGAGAC
TGAAGGTAACTGCAAGTNCGG
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