CB250262

Overview
NameCB250262
Unique NameCB250262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length277
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13056 contig Csv1_Contig13056:12..288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250262 vs. ExPASy Swiss-Prot
Match: CRK35_ARATH (Putative cysteine-rich receptor-like protein kinase 35 OS=Arabidopsis thaliana GN=CRK35 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 28/67 (41.79%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    4 LWKNGEGMEFIDSSLDDSSSAWKLMRCMQVALLCVQENAADRPTMLEILVMLKSETADIKTPKKPAF 204
            LW+NG  +E +D ++ +S  + +  RC+ +ALLCVQE+ ADRP +  I++ML S T  +  P+ P F
Sbjct:  566 LWRNGSPLELVDPTIGESYQSSEATRCIHIALLCVQEDPADRPLLPAIIMMLTSSTTTLHVPRAPGF 632          
BLAST of CB250262 vs. ExPASy Swiss-Prot
Match: CRK20_ARATH (Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana GN=CRK20 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.708e-11
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:    4 LWKNGEGMEFIDSSLDDSSSAWKLMRCMQVALLCVQENAADRPTMLEILVMLKSETADIKTPKKPAFSVKRDNDE 228
            LW NG   E +D S  D+    ++ RC+ +ALLCVQE+A DRPTM  I+ ML + +  +  P+ P F ++   ++
Sbjct:  565 LWSNGSPSELVDPSFGDNYQTSEITRCIHIALLCVQEDANDRPTMSAIVQMLTTSSIALAVPRPPGFFLRSKQEQ 639          
BLAST of CB250262 vs. ExPASy Swiss-Prot
Match: CRK4_ARATH (Cysteine-rich receptor-like protein kinase 4 OS=Arabidopsis thaliana GN=CRK4 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    4 LWKNGEGMEFIDSSLDDSSSAWKLMRCMQVALLCVQENAADRPTMLEILVMLKSETADIKTPKKPAFSVKRDNDE 228
            LW NG  +E +D S  D+    ++ RC+ +ALLCVQE A DRPTM  I+ ML + +  +  P++P F  +    E
Sbjct:  573 LWSNGSPLELVDPSFRDNYRINEVSRCIHIALLCVQEEAEDRPTMSAIVQMLTTSSIALAVPQRPGFFFRSSKHE 647          
BLAST of CB250262 vs. ExPASy Swiss-Prot
Match: CRK23_ARATH (Putative cysteine-rich receptor-like protein kinase 23 OS=Arabidopsis thaliana GN=CRK23 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 28/78 (35.90%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    4 LWKNGEGMEFIDSSLDDSSSAWKLMRCMQVALLCVQENAADRPTMLEILVMLKSETADIKTPKKPAFSVKRDNDEISE 237
            LW NG  ++ +D S  D+     + RC+ +ALLCVQE+  DRP M  I+ ML + +  +  PK+P F  +  ++++ E
Sbjct:  729 LWSNGSQLDLVDPSFGDNYQTHDITRCIHIALLCVQEDVDDRPNMSAIVQMLTTSSIVLAVPKQPGFFFRGRHEQVGE 806          
BLAST of CB250262 vs. ExPASy Swiss-Prot
Match: CRK22_ARATH (Cysteine-rich receptor-like protein kinase 22 OS=Arabidopsis thaliana GN=CRK22 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.737e-11
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    4 LWKNGEGMEFIDSSLDDSSSAWKLMRCMQVALLCVQENAADRPTMLEILVMLKSETADIKTPKKPAF--SVKRDNDEISE 237
            LW+NG  ++ +DSS+  +  + ++ RC+ +ALLCVQEN  DRP +  I+ ML S T  +  P  P F    +R+ D +SE
Sbjct:  576 LWRNGSQLKLLDSSIGRNYQSNEVTRCIHIALLCVQENPEDRPKLSTIVSMLTSNTISVPAPGIPGFFPQSRRELDPLSE 655          
The following BLAST results are available for this feature:
BLAST of CB250262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CRK35_ARATH3.347e-1141.79Putative cysteine-rich receptor-like protein kinas... [more]
CRK20_ARATH5.708e-1138.67Putative cysteine-rich receptor-like protein kinas... [more]
CRK4_ARATH7.455e-1140.00Cysteine-rich receptor-like protein kinase 4 OS=Ar... [more]
CRK23_ARATH7.455e-1135.90Putative cysteine-rich receptor-like protein kinas... [more]
CRK22_ARATH9.737e-1140.00Cysteine-rich receptor-like protein kinase 22 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionEST0029 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ037 similar to receptor-like kinase CHRK-1 (acc# AAD52097), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250262 ID=CB250262; Name=CB250262; organism=Citrus sinensis; type=EST; length=277bp
GGATTGTGGAAAAATGGTGAGGGAATGGAGTTTATTGATTCATCACTTGA
TGATTCCTCTTCAGCATGGAAACTCATGAGATGCATGCAAGTAGCTTTGC
TCTGCGTCCAAGAAAATGCTGCAGATAGACCAACCATGCTTGAAATTCTT
GTGATGCTCAAAAGCGAAACTGCAGACATAAAAACTCCGAAGAAGCCTGC
TTTTTCAGTTAAAAGAGACAACGATGAGATAAGTGAATGCATGTTGCATC
ATCAACAGAATAAATGTTAGCCTCCAA
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