CB290208

Overview
NameCB290208
Unique NameCB290208
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9664 contig Csv1_Contig9664:172..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CATB_MACFA (Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.047e-29
Identity = 88/254 (34.65%), Postives = 114/254 (44.88%), Query Frame = 2
Query:   65 CLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSH------PGCEPAYPTPKCVRKCVK-KNQLWRNSKHYSISAYRINSDPEDIMA 766
            CLL LG   S+              H L D ++  VN+     W+A  N  F N  V   K L G         LG P         + LKLP+SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+                   YP  AW ++   G+V+         C PY     C H      P C     TPKC + C    +  ++  KHY  ++Y +++  +DIMA
Sbjct:   10 CLLALGDARSRP-----------SFHPLSDELVNYVNKQ-NTTWQAGHN--FYNVDVSYLKRLCGT-------FLGGPKPPQRVMFTEDLKLPESFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGIMCGDGCNGGYPAGAWNFWTRKGLVSGGLYDSHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMA 241          
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CATB_PONAB (Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.793e-28
Identity = 82/229 (35.81%), Postives = 106/229 (46.29%), Query Frame = 2
Query:  140 HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSH------PGCEPAYPTPKCVRKCVK-KNQLWRNSKHYSISAYRINSDPEDIMA 766
            H L D ++  VN+     W+A  N  F N  V   K L G         LG P         + LKLP+SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+                   YP  AW ++   G+V+         C PY     C H      P C     TPKC + C    +  ++  KHY  ++Y +++   DIMA
Sbjct:   24 HPLSDELVNYVNKR-NTTWQAGHN--FYNVDVSYLKKLCGT-------FLGGPKPPQRVMFTEDLKLPESFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSERDIMA 241          
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CATB_HUMAN (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 3.994e-28
Identity = 81/229 (35.37%), Postives = 106/229 (46.29%), Query Frame = 2
Query:  140 HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSH------PGCEPAYPTPKCVRKCVK-KNQLWRNSKHYSISAYRINSDPEDIMA 766
            H L D ++  VN+     W+A  N  F N  +   K L G         LG P         + LKLP SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+                   YP  AW ++   G+V+         C PY     C H      P C     TPKC + C    +  ++  KHY  ++Y +++  +DIMA
Sbjct:   24 HPLSDELVNYVNKR-NTTWQAGHN--FYNVDMSYLKRLCGT-------FLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMA 241          
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CPR6_CAEEL (Cathepsin B-like cysteine proteinase 6 OS=Caenorhabditis elegans GN=cpr-6 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.416e-27
Identity = 89/274 (32.48%), Postives = 124/274 (45.26%), Query Frame = 2
Query:   50 LFLTTCLLILGVISSQTFAEGVVSKLK---LDSHILQ---DSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVP------------VKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSH--------PGCEPAYPTPKCVRKCVK--KNQLWRNSKHYSISAYRINSDPEDI 760
            L   +C+++    +     E V+ K +   +DS   +   D +I  VNEN    W A +  +FS+        + G     K  L+GV              KT D  L +P+SFD+R  WP+C +I  I DQ  CGSCWAFGAVEA+SDR CI  H  + ++LS +                  P++AWRY+V  G+VT         C PY     C H        P     YPTPKC +KCV    ++ +   K +  SAY +  D E I
Sbjct:    4 LLFLSCIVVAAYCACNDNLESVLDKYRNREIDSEAAELDGDDLIDYVNENQNL-WTAKKQRRFSS--------VYGENDKAKWGLMGVNHVRLSVKGKQHLSKTKDLDLDIPESFDSRDNWPKCDSIKVIRDQSSCGSCWAFGAVEAMSDRICIASHGELQVTLSADDLLSCCKSCGFGCNGGD-PLAAWRYWVKDGIVTGSNYTANNGCKPY-PFPPCEHHSKKTHFDPCPHDLYPTPKCEKKCVSDYTDKTYSEDKFFGASAYGVKDDVEAI 266          
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CYSP_SCHJA (Cathepsin B-like cysteine proteinase OS=Schistosoma japonicum GN=CATB PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.532e-27
Identity = 78/245 (31.84%), Postives = 118/245 (48.16%), Query Frame = 2
Query:   83 VISSQTFAEG-VVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLG--VPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN-XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSH------PGC-EPAYPTPKCVRKCVKKNQL-WRNSKHYSISAYRINSDPEDI 760
            ++S  TF E  V ++       L D +I  +NE+P AGWKA ++ +F  +++   + L+G +     +       V  HD ++++P  FD+R  WP C +IS+I DQ  CGSCWAFGAVEA++DR CI  G   S  ++                  +P  AW Y+V  G+VT         C PY     C H      P C    Y TP+C + C K  +  +   KHY   +Y + ++ + I
Sbjct:    8 IVSLFTFLEAHVTTRNNQRIEPLSDEMISFINEHPDAGWKADKSDRF--HSLDDARILMGARKEDAEMKRNRRPTVDHHDLNVEIPSQFDSRKKWPHCKSISQIRDQSRCGSCWAFGAVEAMTDRICIQSGGGQSAELSALDLISCCKDCGDGCQGGFPGVAWDYWVKRGIVTGGSKENHTGCQPY-PFPKCEHHTKGKYPACGTKIYKTPQCKQTCQKGYKTPYEQDKHYGDESYNVQNNEKVI 249          
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CATB_RAT (Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 7.532e-27
Identity = 79/233 (33.91%), Postives = 108/233 (46.35%), Query Frame = 2
Query:  128 KLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYFDSTGCSH------PGCEPAYPTPKCVRKC-VKKNQLWRNSKHYSISAYRINSDPEDIMA 766
            K  SH L D +I  +N+     W+A RN  F N  +   K L G        +LG P         + + LP+SFDAR  W  C TI++I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S                   YP  AW ++   G+V+         C PY     C H      P C     TPKC + C    +  ++  KHY  ++Y ++   ++IMA
Sbjct:   20 KPSSHPLSDDMINYINKQ-NTTWQAGRN--FYNVDISYLKKLCGT-------VLGGPNLPERVGFSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPY-TIPPCEHHVNGSRPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMA 241          
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CYSP_SCHMA (Cathepsin B-like cysteine proteinase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.088e-25
Identity = 82/249 (32.93%), Postives = 121/249 (48.59%), Query Frame = 2
Query:   74 ILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLG--VPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLS-VNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEE-------CDPYFDSTGCSH------PGC-EPAYPTPKCVRKCVKKNQL-WRNSKHYSISAYRINSDPEDI 760
            IL + S  TF E  +S        L D II  +NE+P AGW+A ++ +F  +++   +  +G +     L       V  +D ++++P +FD+R  WP C +I+ I DQ  CGSCW+FGAVEA+SDR CI  G   N+ LS V+                  P  AW Y+V  G+VT         C+PY     C H      P C    Y TP+C + C +K +  +   KH   S+Y + +D + I
Sbjct:    5 ILCIASLITFLEAHISVKNEKFEPLSDDIISYINEHPNAGWRAEKSNRF--HSLDDARIQMGARREEPDLRRKRRPTVDHNDWNVEIPSNFDSRKKWPGCKSIATIRDQSRCGSCWSFGAVEAMSDRSCIQSGGKQNVELSAVDLLTCCESCGLGCEGGILGP--AWDYWVKEGIVTASSKENHTGCEPY-PFPKCEHHTKGKYPPCGSKIYNTPRCKQTCQRKYKTPYTQDKHRGKSSYNVKNDEKAI 248          
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CATB_BOVIN (Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5)

HSP 1 Score: 115.161 bits (287), Expect = 4.133e-25
Identity = 76/226 (33.63%), Postives = 104/226 (46.02%), Query Frame = 2
Query:  146 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDK---SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSH------PGCEPAYPTPKCVRKCVK-KNQLWRNSKHYSISAYRINSDPEDIMA 766
            L D ++  VN+     WKA  N  F N  +   K L G       +L G  +   D     + LP+SFDAR  WP C TI  I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S                   +P  AW ++   G+V+         C PY     C H      P C     TPKC + C    +  ++  KH+  S+Y + ++ ++IMA
Sbjct:   26 LSDELVNFVNKQ-NTTWKAGHN--FYNVDLSYVKKLCGA------ILGGPKLPQRDAFAADVVLPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMA 241          
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CATB_MOUSE (Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.203e-24
Identity = 82/260 (31.54%), Postives = 115/260 (44.23%), Query Frame = 2
Query:   50 LFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVK----THDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGC--------------SHPGCEPAYPTPKCVRKC-VKKNQLWRNSKHYSISAYRINSDPEDIMA 766
            L L +CLL L      T A       K   H L D +I  +N+     W+A RN  F N  +   K L G        +LG P         + + LP++FDAR  W  C TI +I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S                   YP  AW ++   G+V+     Y    GC              S P C     TP+C + C    +  ++  KH+  ++Y +++  ++IMA
Sbjct:    5 LILLSCLLAL------TSAHD-----KPSFHPLSDDLINYINKQ-NTTWQAGRN--FYNVDISYLKKLCGT-------VLGGPKLPGRVAFGEDIDLPETFDAREQWSNCPTIGQIRDQGSCGSCWAFGAVEAISDRTCIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWSFWTKKGLVSG--GVYNSHVGCLPYTIPPCEHHVNGSRPPCTGEGDTPRCNKSCEAGYSPSYKEDKHFGYTSYSVSNSVKEIMA 241          
BLAST of CB290208 vs. ExPASy Swiss-Prot
Match: CTSB_DICDI (Cathepsin B OS=Dictyostelium discoideum GN=ctsB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 69/194 (35.57%), Postives = 95/194 (48.97%), Query Frame = 2
Query:  194 WKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDK-SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYP-------TPKCVRKCVKKNQL-WRNSKHYSISAYRINSD 748
            W   +  QF N  VGQ   LLG K +P    L   +K++D   +++P SF+A++ WP C+TIS+I +Q  CGSCWAFGA E+ +DR CIH   N+ LS                   +  SAW +    G V+EEC PY      + P C PA         TP C ++C   + L +   KH     Y  +SD
Sbjct:   39 WVEEQTDQFDNIKVGQ---LLGFKRSPNRPKL--QIKSYDPLGVQIPTSFNAQTNWPNCTTISQIQNQARCGSCWAFGATESATDRLCIHNNENVQLSFMDMVTCDETDNGCEGGDAF--SAWNWLRKQGAVSEECLPY------TIPTCPPAQQPCLNFVNTPSCTKECQSNSSLIYSQDKHKMAKIYSFDSD 219          
The following BLAST results are available for this feature:
BLAST of CB290208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CATB_MACFA8.047e-2934.65Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV... [more]
CATB_PONAB1.793e-2835.81Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1[more]
CATB_HUMAN3.994e-2835.37Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3[more]
CPR6_CAEEL4.416e-2732.48Cathepsin B-like cysteine proteinase 6 OS=Caenorha... [more]
CYSP_SCHJA7.532e-2731.84Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
CATB_RAT7.532e-2733.91Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2[more]
CYSP_SCHMA1.088e-2532.93Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
CATB_BOVIN4.133e-2533.63Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5[more]
CATB_MOUSE1.203e-2431.54Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2[more]
CTSB_DICDI4.570e-2435.57Cathepsin B OS=Dictyostelium discoideum GN=ctsB PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01aa10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290208 ID=CB290208; Name=CB290208; organism=Citrus sinensis; type=EST; length=766bp
GCACTAGGCTTCGTCCTTCCCGAGCCAGTCATCCATGGCTTCATCTCACC
TCTTTCTTACTACATGTTTGTTAATTCTTGGCGTTATCTCCTCCCAGACT
TTTGCAGAGGGAGTGGTTTCCAAGCTCAAGCTTGATTCTCATATTCTCCA
GGATTCAATCATCAAAGAAGTGAATGAGAACCCTAAGGCTGGATGGAAAG
CTGCCAGAAATCCTCAATTTTCCAATTACACTGTTGGGCAATTTAAGCAC
CTTCTTGGAGTCAAGCCAACACCTAAAGGGCTGCTCTTGGGTGTCCCTGT
TAAAACTCATGACAAATCCTTGAAGTTGCCTAAAAGCTTTGATGCAAGGT
CCGCTTGGCCACAATGCAGCACCATTAGTAGGATCCTAGATCAGGGCCAT
TGTGGTTCTTGTTGGGCTTTTGGTGCTGTTGAAGCGCTATCTGATCGTTT
CTGCATCCATTTTGGCATGAACCTATCTCTATCAGTTAATGATCTTTTAG
CCTGCTGTGGCTTTTTGTGTGGAGATGGTTGTGACGGGGGTTATCCAATT
TCTGCATGGCGATACTTTGTCCACCATGGTGTTGTTACCGAAGAGTGTGA
TCCCTACTTTGATAGTACTGGCTGTTCCCACCCTGGTTGTGAGCCGGCAT
ATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCAGCTTTGG
AGGAATTCAAAGCACTACAGTATTAGTGCATATAGAATCAATTCTGATCC
AGAGGACATAATGGCA
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