CB290214

Overview
NameCB290214
Unique NameCB290214
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290214 vs. ExPASy Swiss-Prot
Match: ALKB_ECOLI (Alpha-ketoglutarate-dependent dioxygenase alkB OS=Escherichia coli (strain K12) GN=alkB PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 47/135 (34.81%), Postives = 66/135 (48.89%), Query Frame = 2
Query:  338 YGNIRPTDGDVPPIIPAEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKI 742
            Y  I P      P +P  FH L  +A                   A  P   PD C+ N Y+   KL LHQDKDE     D   P+VS S+G  A F +G L+     K+++LE GDV+++GG+SR  +HG++ +
Sbjct:   78 YSPIDPQTNKPWPAMPQSFHNLCQRAAT----------------AAGYPDFQPDACLINRYAPGAKLSLHQDKDEP----DLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPL 192          
BLAST of CB290214 vs. ExPASy Swiss-Prot
Match: ALKB_SALTY (Alpha-ketoglutarate-dependent dioxygenase alkB OS=Salmonella typhimurium GN=alkB PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.208e-13
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  467 IEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKI 742
            I A      PD C+ N Y+   KL LHQDKDE     D   P+VS S+G  A F +G LR     ++++LE GD++++GG+SR  +HG++ +
Sbjct:  105 IAAGYASFQPDACLINRYAPGAKLSLHQDKDEP----DLRAPIVSVSLGVPAVFQFGGLRRSDPIQRILLEHGDIVVWGGESRLFYHGIQPL 192          
BLAST of CB290214 vs. ExPASy Swiss-Prot
Match: ALKB_CAUCR (Alpha-ketoglutarate-dependent dioxygenase alkB homolog OS=Caulobacter crescentus GN=alkB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = 2
Query:  482 PCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTA 757
            P   PD C+ N Y    ++GLHQD+DE+    D   PV+S S+GD+A F  G +      + + L SGDV    G +R  FHGV++I P ++
Sbjct:  114 PETPPDSCLVNLYRDGARMGLHQDRDEA----DPRFPVLSISLGDTAVFRIGGVNRKDPTRSLRLASGDVCRLLGPARLAFHGVDRILPGSS 201          
BLAST of CB290214 vs. ExPASy Swiss-Prot
Match: ALKB_CAUCN (Alpha-ketoglutarate-dependent dioxygenase alkB homolog OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=alkB PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = 2
Query:  482 PCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTA 757
            P   PD C+ N Y    ++GLHQD+DE+    D   PV+S S+GD+A F  G +      + + L SGDV    G +R  FHGV++I P ++
Sbjct:  114 PETPPDSCLVNLYRDGARMGLHQDRDEA----DPRFPVLSISLGDTAVFRIGGVNRKDPTRSLRLASGDVCRLLGPARLAFHGVDRILPGSS 201          
The following BLAST results are available for this feature:
BLAST of CB290214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ALKB_ECOLI5.615e-1434.81Alpha-ketoglutarate-dependent dioxygenase alkB OS=... [more]
ALKB_SALTY6.208e-1340.22Alpha-ketoglutarate-dependent dioxygenase alkB OS=... [more]
ALKB_CAUCR4.449e-1139.13Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
ALKB_CAUCN4.449e-1139.13Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ab02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290214 ID=CB290214; Name=CB290214; organism=Citrus sinensis; type=EST; length=773bp
GGAGCATTCTGTACAACAGGCAATAGATAAGTCCTTTGATCTTTGTCCGC
CCAAGAAAGGAACTGTAATGCTGAATCCTTCCTTACTTGTGACTAATAGA
CAAAAAAGGAATGACTTAAAGCTTTCCATAGAAGGGCAAAGTCAAACTAT
ATTGAAGCCCGGGATGGTGTTACTGAAGAAGTATTTATCCATCAGTGATC
AGGTCAAAATAGTGAAGATATGCCGAGACCTTGGGCTGGGACCTGGAGGT
TTCTACCAACCTGGCTACCGTGATGGCGCCAACCTTTATTTAAAAATGAT
GTGCCTTGGTAAAAATTGGGACCCTGAGACAAGTCAGTATGGCAATATCC
GGCCAACAGATGGTGATGTACCACCAATCATACCGGCTGAATTTCATCAG
CTTGTTGGGAAAGCAATCCAAGATTCCCGTGCCCTCATAGAAAAAATATC
TACGGGGAGAAAAGATATAGAAGCTGAACTTCCTTGTATGTCACCTGATA
TCTGTATTGCAAATTTTTATTCGGCAACTGGGAAACTCGGCCTCCATCAG
GATAAAGATGAAAGTCAAGAAAGTATTGATAAATGTTTACCTGTTGTGTC
CTTCTCAATTGGAGATTCTGCAGAATTTTTATATGGTGATCTGAGGGATG
TAGCCAATGCAAAGAAAGTTATCCTGGAATCTGGTGATGTTCTAATATTT
GGTGGGAAATCTAGAAGAATTTTCCATGGTGTAGAAAAAATTTTCCCAGA
CACTGCCCCTAAGTCCCTGCTGG
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