CB290220

Overview
NameCB290220
Unique NameCB290220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9377 contig Csv1_Contig9377:1381..1978. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290220 vs. ExPASy Swiss-Prot
Match: MPPA_SOLTU (Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.327e-36
Identity = 74/89 (83.15%), Postives = 84/89 (94.38%), Query Frame = -1
Query:  323 EVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 589
            EVDQVQL+RAKQ+TKSAILMNLESRMV SEDIGRQ+LTYGER PVEHFLK ++ V+AKDIASV QKL+SSPLTMASYGDV+++PSYDAV
Sbjct:  409 EVDQVQLNRAKQATKSAILMNLESRMVASEDIGRQLLTYGERNPVEHFLKAIDAVSAKDIASVVQKLISSPLTMASYGDVLSLPSYDAV 497          
BLAST of CB290220 vs. ExPASy Swiss-Prot
Match: MPPA2_ARATH (Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=At3g16480 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.065e-30
Identity = 62/91 (68.13%), Postives = 79/91 (86.81%), Query Frame = -1
Query:  323 EGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 595
            +G+V+Q  LDRAK +TKSAILMNLESRM+ +EDIGRQ+LTYGERKPV+ FLKTV+ +T KDIA    K+++ PLTMA++GDV+NVPSYD+V
Sbjct:  404 DGKVNQKHLDRAKAATKSAILMNLESRMIAAEDIGRQILTYGERKPVDQFLKTVDQLTLKDIADFTSKVITKPLTMATFGDVLNVPSYDSV 494          
BLAST of CB290220 vs. ExPASy Swiss-Prot
Match: MPPA1_ARATH (Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.642e-29
Identity = 59/90 (65.56%), Postives = 75/90 (83.33%), Query Frame = -1
Query:  323 GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 592
            G+V+Q  LDRAK +TKSA+LMNLESRM+ +EDIGRQ+LTYGERKPV+ FLK+V+ +T KDIA    K++S PLTM S+GDV+ VPSYD +
Sbjct:  409 GKVNQAHLDRAKAATKSAVLMNLESRMIAAEDIGRQILTYGERKPVDQFLKSVDQLTLKDIADFTSKVISKPLTMGSFGDVLAVPSYDTI 498          
BLAST of CB290220 vs. ExPASy Swiss-Prot
Match: MPPA_PONAB (Mitochondrial-processing peptidase subunit alpha OS=Pongo abelii GN=PMPCA PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.942e-12
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = -1
Query:  323 GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 592
            G VD V+L+RAK    S ++MNLESR V+ ED+GRQVL    RK        +  V  +D+  VA K+L     +A+ GD+ ++P+Y+ +
Sbjct:  417 GTVDAVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVKPEDVKRVASKMLRGKPAVAALGDLTDLPTYEHI 506          
BLAST of CB290220 vs. ExPASy Swiss-Prot
Match: MPPA_HUMAN (Mitochondrial-processing peptidase subunit alpha OS=Homo sapiens GN=PMPCA PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.942e-12
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = -1
Query:  323 GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 592
            G VD V+L+RAK    S ++MNLESR V+ ED+GRQVL    RK        +  V  +D+  VA K+L     +A+ GD+ ++P+Y+ +
Sbjct:  417 GTVDTVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVKPEDVKRVASKMLRGKPAVAALGDLTDLPTYEHI 506          
BLAST of CB290220 vs. ExPASy Swiss-Prot
Match: MPPA_RAT (Mitochondrial-processing peptidase subunit alpha OS=Rattus norvegicus GN=Pmpca PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = -1
Query:  323 VDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 586
            VD V+L+RAK    S ++MNLESR V+ ED+GRQVL    RK        +  V  +DI  VA K+L     +A+ GD+ ++P+Y+ +
Sbjct:  418 VDLVELERAKTQLMSMLMMNLESRPVIFEDVGRQVLATHSRKLPHELCTLIRNVKPEDIKRVASKMLRGKPAVAALGDLTDLPTYEHI 505          
BLAST of CB290220 vs. ExPASy Swiss-Prot
Match: MPPA_MOUSE (Mitochondrial-processing peptidase subunit alpha OS=Mus musculus GN=Pmpca PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = -1
Query:  323 VDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 586
            VD V+L+RAK    S ++MNLESR V+ ED+GRQVL    RK        +  V  +DI  VA K+L     +A+ GD+ ++P+Y+ +
Sbjct:  418 VDLVELERAKTQLMSMLMMNLESRPVIFEDVGRQVLATHSRKLPHELCTLIRNVKPEDIKRVASKMLRGKPAVAALGDLTDLPTYEHI 505          
BLAST of CB290220 vs. ExPASy Swiss-Prot
Match: MPPA_BOVIN (Mitochondrial-processing peptidase subunit alpha OS=Bos taurus GN=PMPCA PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = -1
Query:  323 GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 592
            G VD V+L+RAK    S ++MNLE+R V+ ED+GRQVL    RK        +  V  +DI  VA K+L     +A+ GD+  +P+Y+ V
Sbjct:  417 GTVDVVELERAKTQLTSMLMMNLEARPVIFEDVGRQVLATRSRKLPHELCALIRDVKPEDIKRVASKMLRGKPAVAALGDLSELPAYEHV 506          
The following BLAST results are available for this feature:
BLAST of CB290220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MPPA_SOLTU7.327e-3683.15Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA2_ARATH2.065e-3068.13Probable mitochondrial-processing peptidase subuni... [more]
MPPA1_ARATH6.642e-2965.56Probable mitochondrial-processing peptidase subuni... [more]
MPPA_PONAB1.942e-1240.00Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_HUMAN1.942e-1240.00Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_RAT7.378e-1240.91Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_MOUSE7.378e-1240.91Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_BOVIN7.378e-1241.11Mitochondrial-processing peptidase subunit alpha O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ab06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290220 ID=CB290220; Name=CB290220; organism=Citrus sinensis; type=EST; length=598bp
TTTTTTTTTTTTTTTTTATTTGAATTGATTCCCTTTGGCATAATTTCTGG
AACAAACTACAAAAGAATATGAGAAATATTTCTAGGAGGCAATTAAGTTT
GTCAATACAGCATCATATTTAAAACTGCTGCTTGCTTAAAACCCAAATTA
TTCATAAAAATGGGAGTGTCATGAAAATCTCTTATTTTGAACTGCAGTTG
ACCGGAAAAGAGCTTCAAAGGAATGCAGATGCACAACAATATAGACAACG
GGTAAGGAGCCTGCCCAGTTTGATACCAAAAAGGAAAAAAAATCAATTTT
ATTTTGACTTGAACTTGCTGCTGACTGCATCATAGCTTGGGACATTGATG
ACATCTCCATATGATGCCATTGTGAGAGGAGATGAAAGAAGCTTCTGTGC
TACGGAAGCAATATCCTTTGCTGTAACTCCTTCCACAGTCTTCAAGAAAT
GCTCCACGGGTTTCCTCTCACCATATGTCAAAACTTGTCTACCTATGTCT
TCGGAAACAACCATTCTTGATTCCAAATTCATCAAAATAGCTGACTTGGT
TGACTGTTTGGCGCGGTCTAGCTGTACTTGATCAACTTCTCCCTCGTG
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