CB290221

Overview
NameCB290221
Unique NameCB290221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9377 contig Csv1_Contig9377:1380..1976. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290221 vs. ExPASy Swiss-Prot
Match: MPPA_SOLTU (Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.670e-32
Identity = 70/89 (78.65%), Postives = 79/89 (88.76%), Query Frame = 2 
Query:   11 EVDXVQLDRAIFSTKSVILMNLESRMVVSEDIGRPLLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 277
            EVD VQL+RA  +TKS ILMNLESRMV SEDIGR LLTYGER PVEHFLK ++ V+AKDIASV QKL+SSPLTMASYGDV+++PSYDAV
Sbjct:  409 EVDQVQLNRAKQATKSAILMNLESRMVASEDIGRQLLTYGERNPVEHFLKAIDAVSAKDIASVVQKLISSPLTMASYGDVLSLPSYDAV 497
[Close]
BLAST of CB290221 vs. ExPASy Swiss-Prot
Match: MPPA2_ARATH (Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=At3g16480 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.788e-26
Identity = 57/89 (64.04%), Postives = 73/89 (82.02%), Query Frame = 2 
Query:   11 EVDXVQLDRAIFSTKSVILMNLESRMVVSEDIGRPLLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 277
            +V+   LDRA  +TKS ILMNLESRM+ +EDIGR +LTYGERKPV+ FLKTV+ +T KDIA    K+++ PLTMA++GDV+NVPSYD+V
Sbjct:  406 KVNQKHLDRAKAATKSAILMNLESRMIAAEDIGRQILTYGERKPVDQFLKTVDQLTLKDIADFTSKVITKPLTMATFGDVLNVPSYDSV 494
[Close]
BLAST of CB290221 vs. ExPASy Swiss-Prot
Match: MPPA1_ARATH (Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.373e-25
Identity = 54/89 (60.67%), Postives = 70/89 (78.65%), Query Frame = 2 
Query:   11 EVDXVQLDRAIFSTKSVILMNLESRMVVSEDIGRPLLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 277
            +V+   LDRA  +TKS +LMNLESRM+ +EDIGR +LTYGERKPV+ FLK+V+ +T KDIA    K++S PLTM S+GDV+ VPSYD +
Sbjct:  410 KVNQAHLDRAKAATKSAVLMNLESRMIAAEDIGRQILTYGERKPVDQFLKSVDQLTLKDIADFTSKVISKPLTMGSFGDVLAVPSYDTI 498
The following BLAST results are available for this feature:
BLAST of CB290221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MPPA_SOLTU1.670e-3278.65Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA2_ARATH1.788e-2664.04Probable mitochondrial-processing peptidase subuni... [more]
MPPA1_ARATH3.373e-2560.67Probable mitochondrial-processing peptidase subuni... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ab06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290221 ID=CB290221; Name=CB290221; organism=Citrus sinensis; type=EST; length=597bp
GCCTTTTAGAGAAGTTGATNAAGTACAGCTAGACCGNGCCATCTTTTCAA
CCAAGTCAGTTATTTTGATGAATTTGGAATCAAGAATGGTTGTTTCCGAA
GACATAGGTAGACCCCTTCTGACATATGGTGAGAGGAAACCCGTGGAGCA
TTTCTTGAAGACTGTGGAAGGAGTTACAGCAAAGGATATTGCTTCCGTAG
CACAGAAGCTTCTTTCATCTCCTCTCACAATGGCATCATATGGAGATGTC
ATCAATGTCCCAAGCTATGATGCAGTCAGCAGCAAGTTCAAGTCAAAATA
AAATTGATTTTTTTTCCTTTTTGGTATCAAACTGGGCAGGCTCCTTACCC
GTTGTCTATATTGTTGTGCATCTGCATTCCTTTGAAGCTCTTTTCCGGTC
AACTGCAGTTCAAAATAAGAGATTTTCATGACACTCCCATTTTTATGAAT
AATTTGGGTTTTAAGCAAGCAGCAGTTTTAAATATGATGCTGTATTGACA
AACTTAATTGCCTCCTAGAAATATTTCTCATATTCTTTTGTAGTTTGTTC
CAGAAATTATCCAAAGGGAATCAATTCAAATAAAAAAAAAAAAAAAA
back to top