CB304404

Overview
NameCB304404
Unique NameCB304404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:220..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304404 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = -3
Query:  310 GNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 492
            GNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    6 GNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CB304404 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.203e-17
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = -3
Query:  307 GNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 492
            GNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    5 GNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CB304404 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.181e-16
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = -3
Query:  313 GNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 492
            GNCDCAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    6 GNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CB304404 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.023e-14
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = -3
Query:  310 NCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 489
            NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    7 NCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CB304404 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.746e-14
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = -3
Query:  313 NCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 489
            NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    7 NCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CB304404 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = -3
Query:  310 GNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 492
            GNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    6 GNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CB304404 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = -3
Query:  310 GNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 492
            GNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    6 GNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CB304404 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.256e-11
Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = -3
Query:  310 GNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 492
            GNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    6 GNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CB304404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MT3_CARPA2.780e-2067.21Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC2.203e-1759.68Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE3.181e-1666.67Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MALDO1.023e-1460.00Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3_PRUAV1.746e-1459.32Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3A_ORYSJ3.292e-1352.46Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI3.292e-1352.46Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ5.256e-1147.54Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_D01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_D01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304404 ID=CB304404; Name=CB304404; organism=Citrus sinensis; type=EST; length=494bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGACTAACAATAATACATTA
AAATTAAACCACACAAGGCCACGGTCATGGCCATGGCCATATATTACATG
ATTATGAAAAAGGAAACACAAAACATTACGAGTGATGGGTGACACAACAC
GCACATCACTCCACACACTAGTAGTAAACCATCATAAAAACGAAGTAAAA
AATTTTTCTTTTTTTTTTAATCACCCTTACATTATTCTTAACCCCCACAA
TATTTAGGCACACTTGCAGCTTCTTATTTTTTGCTGCATGGGTTTGCTTA
TTAGTGACTACCACAAGTGCAGTTCACACAAGCGCAGGTGGGGCCGCACT
TGCAGTTACCTTCAGCCTCAGCAGCCTGAACGTCCATGACAACAACGGTG
CTGACAAAGCTCAAGTCAGTCTCAACAAAGTCAGCAGCATAGCTGCTTCC
CTTCTTCACACACTGGCTCCTGTCAGCGCAGTCGCAGTTGCCCT
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