CB304407

Overview
NameCB304407
Unique NameCB304407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304407_ssr270 microsatellite CB304407_ssr270:270..284. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB304407 vs. ExPASy Swiss-Prot
Match: BI1_ARATH (Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.054e-30
Identity = 65/84 (77.38%), Postives = 75/84 (89.29%), Query Frame = -3
Query:  262 FASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHALTLFTDFVAVFVRILIIMLKHASXXXXXXXKRRD 513
            FASSIFGGS +IFKFELYFGLL+FVGY+VVDTQ+IIEKAH GD+DYVKH+LTLFTDFVAVFVRILIIMLK+++       KRR+
Sbjct:  164 FASSIFGGSASIFKFELYFGLLIFVGYMVVDTQEIIEKAHLGDMDYVKHSLTLFTDFVAVFVRILIIMLKNSADKEEKKKKRRN 247          
BLAST of CB304407 vs. ExPASy Swiss-Prot
Match: BI1_ORYSJ (Bax inhibitor 1 OS=Oryza sativa subsp. japonica GN=BI1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.564e-26
Identity = 55/73 (75.34%), Postives = 66/73 (90.41%), Query Frame = -3
Query:  295 FASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHALTLFTDFVAVFVRILIIMLKHAS 513
            FA+SIFG ST  F FE+YFGLL+F+GY+V DTQ+IIE+AH GD+DY+KHALTLFTDFVAV VRIL+IMLK+AS
Sbjct:  165 FAASIFGHSTGSFMFEVYFGLLIFLGYMVYDTQEIIERAHHGDMDYIKHALTLFTDFVAVLVRILVIMLKNAS 237          
BLAST of CB304407 vs. ExPASy Swiss-Prot
Match: BI1_PAROL (Probable Bax inhibitor 1 OS=Paralichthys olivaceus GN=tmbim6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.398e-12
Identity = 30/65 (46.15%), Postives = 47/65 (72.31%), Query Frame = -3
Query:  310 SIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHALTLFTDFVAVFVRILIIM 504
            ++F GS  +FK  +Y GLL+  G+++ DTQ IIEKA  GD DYV H++ LF DF+ +F ++++I+
Sbjct:  161 NMFFGSVMLFKAHMYLGLLIMCGFVLXDTQLIIEKAENGDKDYVWHSVDLFLDFITIFRKLMVIL 225          
BLAST of CB304407 vs. ExPASy Swiss-Prot
Match: BI1_RAT (Bax inhibitor 1 OS=Rattus norvegicus GN=Tmbim6 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.862e-11
Identity = 31/65 (47.69%), Postives = 46/65 (70.77%), Query Frame = -3
Query:  310 SIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHALTLFTDFVAVFVRILIIM 504
            ++F GS  +F+  LY GLLV  G+++ DTQ IIEKA  GD DY+ H + LF DFV +F ++++I+
Sbjct:  161 NLFFGSIWLFQANLYMGLLVMCGFVLFDTQLIIEKAEHGDKDYIWHCIDLFLDFVTLFRKLMLIL 225          
BLAST of CB304407 vs. ExPASy Swiss-Prot
Match: BI1_MOUSE (Bax inhibitor 1 OS=Mus musculus GN=Tmbim6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.431e-11
Identity = 31/65 (47.69%), Postives = 46/65 (70.77%), Query Frame = -3
Query:  310 SIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHALTLFTDFVAVFVRILIIM 504
            ++F GS  +F+  LY GLLV  G+++ DTQ IIEKA  GD DY+ H + LF DFV +F ++++I+
Sbjct:  161 NLFFGSIWLFQANLYLGLLVMCGFVLFDTQLIIEKAEHGDKDYIWHCVDLFLDFVTLFRKLMLIL 225          
BLAST of CB304407 vs. ExPASy Swiss-Prot
Match: BI1_HUMAN (Bax inhibitor 1 OS=Homo sapiens GN=TMBIM6 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = -3
Query:  310 SIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHALTLFTDFVAVFVRILIIM 504
            ++F GS  +F+  LY GL+V  G+++ DTQ IIEKA  GD DY+ H + LF DF+ VF ++++I+
Sbjct:  161 NVFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAEHGDQDYIWHCIDLFLDFITVFRKLMMIL 225          
BLAST of CB304407 vs. ExPASy Swiss-Prot
Match: BI1_PONAB (Bax inhibitor 1 OS=Pongo abelii GN=TMBIM6 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 29/65 (44.62%), Postives = 46/65 (70.77%), Query Frame = -3
Query:  310 SIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHALTLFTDFVAVFVRILIIM 504
            ++F GS  +F+  LY GL+V  G+++ DTQ IIEKA  GD DY+ H + LF DF+ +F ++++I+
Sbjct:  161 NVFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAEHGDQDYIWHCIDLFLDFITLFRKLMMIL 225          
BLAST of CB304407 vs. ExPASy Swiss-Prot
Match: BI1_PIG (Bax inhibitor 1 OS=Sus scrofa GN=TMBIM6 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 30/65 (46.15%), Postives = 47/65 (72.31%), Query Frame = -3
Query:  310 SIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHALTLFTDFVAVFVRILIIM 504
            ++F GS  +F+  LY GL+V  G+++ DTQ IIEKA  GD DY+ H + LF+DFV +F ++++I+
Sbjct:  161 NLFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAENGDKDYIWHCVDLFSDFVTLFRKLMMIL 225          
BLAST of CB304407 vs. ExPASy Swiss-Prot
Match: BI1_BOVIN (Bax inhibitor 1 OS=Bos taurus GN=TMBIM6 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = -3
Query:  310 SIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHALTLFTDFVAVFVRILIIM 504
            ++F GS  +F+  LY GL+V  G+++ DTQ IIEKA  GD DY+ H + LF DFV +F ++++I+
Sbjct:  161 NLFFGSVWLFQANLYMGLVVMCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMIL 225          
The following BLAST results are available for this feature:
BLAST of CB304407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
BI1_ARATH3.054e-3077.38Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE... [more]
BI1_ORYSJ4.564e-2675.34Bax inhibitor 1 OS=Oryza sativa subsp. japonica GN... [more]
BI1_PAROL6.398e-1246.15Probable Bax inhibitor 1 OS=Paralichthys olivaceus... [more]
BI1_RAT1.862e-1147.69Bax inhibitor 1 OS=Rattus norvegicus GN=Tmbim6 PE=... [more]
BI1_MOUSE2.431e-1147.69Bax inhibitor 1 OS=Mus musculus GN=Tmbim6 PE=2 SV=... [more]
BI1_HUMAN3.175e-1146.15Bax inhibitor 1 OS=Homo sapiens GN=TMBIM6 PE=1 SV=... [more]
BI1_PONAB7.074e-1144.62Bax inhibitor 1 OS=Pongo abelii GN=TMBIM6 PE=2 SV=... [more]
BI1_PIG9.239e-1146.15Bax inhibitor 1 OS=Sus scrofa GN=TMBIM6 PE=2 SV=1[more]
BI1_BOVIN9.239e-1146.15Bax inhibitor 1 OS=Bos taurus GN=TMBIM6 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_D05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_D05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304407 ID=CB304407; Name=CB304407; organism=Citrus sinensis; type=EST; length=560bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTAGCAAACAGTGAATTTT
ATTAAAATGTCGTTTCAGAACCCACCGGCCATTGTCAAGCAGCAAAATAG
CAAAAATTAGCGAACACAACTAACCCCATGTATTACATCTGATTGTTAAG
AGAGGTGCAGCTTGGAGAAGAGAAGTAAGCACAAGAATATACACAACAAA
TTTAGTTGTTCTGCAACCCTTACTTAAACAAGCACTGTCCGTCCAGCTAC
CGAGAGATTCAGTCTCTCCTCTTCTTCTTCTTCTCCTCTTTCTCAGATGC
ATGCTTCAACATGATTATGAGAATACGAACAAAGACAGCAACAAAGTCAG
TGAAAAGAGTCAGGGCATGCTTGACATAATCCAAGTCTCCAAAGTGAGCT
TTCTCAATTATATCCTGGGTATCCACCACGATGTAGCCAACAAACACCAA
CAGCCCAAAGTATAACTCAAACTTGAAGATAGCTGTTGAACCACCAAAGA
TAGAGGAAGCAAAATGCAACCAAAGAAGCATGGACAGGCCTGATGAAAGC
AAGCCACCAA
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