CB304410

Overview
NameCB304410
Unique NameCB304410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11535 contig Csv1_Contig11535:64..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304410 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.328e-31
Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = -1
Query:  277 LKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGLE 540
            LK LEG LGD+P+FGG++FG+VD++LI FY WFY YET G F+ EAECPKF+AW KRC+QRE+VAK+LPD  KV EFV  +R   GLE
Sbjct:  134 LKVLEGALGDRPYFGGESFGFVDIALIGFYSWFYAYETFGNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQKFGLE 221          
BLAST of CB304410 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.328e-31
Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = -1
Query:  277 LKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGLE 540
            LK LEG LGDKP+FGG++FG+VD++LI +Y WFY YET G F+ EAECPKF+AW KRC+QRE+VAK+LPD  KV EFV  +R   GLE
Sbjct:  134 LKVLEGALGDKPYFGGESFGFVDIALIGYYSWFYAYETFGNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQKFGLE 221          
BLAST of CB304410 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.544e-27
Identity = 48/88 (54.55%), Postives = 69/88 (78.41%), Query Frame = -1
Query:  280 VLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGL 543
            +LKTLEG+LG+K +FGGDN G+VD++L+PF  WFY+YETC  F++EAECPK + W K C++ E+V+K+LP   K++ FV  ++  LGL
Sbjct:  132 ILKTLEGELGNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSIEAECPKLVVWAKTCMESESVSKSLPHPHKIYGFVLELKHKLGL 219          
BLAST of CB304410 vs. ExPASy Swiss-Prot
Match: GSTX3_SOYBN (Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.111e-24
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = -1
Query:  286 VLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNL 543
            + K LE  L DKPF+G D FG+VDL LI F  WFYTYET G F +E ECPK +AWVKRC++RETV+  LPD KKV+  +  ++  L
Sbjct:  131 IFKQLEETLTDKPFYGDDTFGFVDLCLITFSSWFYTYETYGNFKMEEECPKLMAWVKRCMERETVSNTLPDAKKVYGLIVELQKTL 216          
BLAST of CB304410 vs. ExPASy Swiss-Prot
Match: GSTX1_NICPL (Probable glutathione S-transferase MSR-1 OS=Nicotiana plumbaginifolia GN=MSR-1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.600e-24
Identity = 45/88 (51.14%), Postives = 67/88 (76.14%), Query Frame = -1
Query:  280 VLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGL 543
            + KTLEG+LG+K +FGGDN G+VD++L+PF  WFY+YETC  F++EAEC K + W + C++ E V+K+LP   K+++FV  ++  LGL
Sbjct:  132 IFKTLEGELGNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSIEAECRKLVVW-QNCMENERVSKSLPHPHKIYDFVLELKHKLGL 218          
BLAST of CB304410 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSI (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. indica GN=GSTU1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.084e-20
Identity = 43/92 (46.74%), Postives = 64/92 (69.57%), Query Frame = -1
Query:  277 VLKTLEGQLGDKPFFGGDN---FGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGLE 543
            +L+TLE +LGD+ FFGG      G+VD++L+PF  WFY+YE CG F+VE   P+  AW +RC + ++VAK LP  +KV++FV  ++   G+E
Sbjct:  140 ILRTLEAELGDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSVEEVAPRLAAWARRCGRIDSVAKHLPSPEKVYDFVGVLKKKYGVE 231          
BLAST of CB304410 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSJ (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. japonica GN=GSTU1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.154e-20
Identity = 42/92 (45.65%), Postives = 63/92 (68.48%), Query Frame = -1
Query:  277 VLKTLEGQLGDKPFFGGDN---FGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGLE 543
            +L+TLE +LGD+ FFGG      G+VD++L+PF  WFY+YE CG F+VE   P+  AW +RC + ++V K LP  +KV++FV  ++   G+E
Sbjct:  140 ILRTLEAELGDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSVEEVAPRLAAWARRCGRIDSVVKHLPSPEKVYDFVGVLKKKYGVE 231          
The following BLAST results are available for this feature:
BLAST of CB304410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GSTXC_TOBAC2.328e-3165.91Probable glutathione S-transferase parC OS=Nicotia... [more]
GSTX4_TOBAC2.328e-3165.91Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXA_TOBAC4.544e-2754.55Probable glutathione S-transferase parA OS=Nicotia... [more]
GSTX3_SOYBN2.111e-2456.98Glutathione S-transferase 3 OS=Glycine max GN=GST3... [more]
GSTX1_NICPL3.600e-2451.14Probable glutathione S-transferase MSR-1 OS=Nicoti... [more]
GSTU1_ORYSI1.084e-2046.74Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTU1_ORYSJ3.154e-2045.65Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_D09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_D09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304410 ID=CB304410; Name=CB304410; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTAAACACACTCTTCGTGAT
TACCATACACTAAGATAACAACAGTAGGGGACAAAATTAATTGTCCTTTA
TTGGATTATTGGAGCTTATTTTTACTAGGGAAATACAACAATCCGAATAC
AAAAACACAATAGGAAAACAACCATCACAAGCCAAACCAACATCAACCAC
CTAAAGAATAAGCAGGCAGCACGATTGCGCTGCTTGACTTATTCTCAGCT
CCAAGGTATGTCCCTTTTTCTCTCTACTCCAATCCTAAATTTGTCCTCAT
CGCTGAAACAAATTCAAACACTTTCTTCCCATCAGGAAGTGCCTTGGCAA
CAGTCTCCCTCTGCAAGCATCTCTTCACCCAAGCTATGAACTTGGGGCAC
TCAGCCTCGACGTTGAACTTTCCACATGTCTCATACGTGTAAAACCAACA
ATAGAATGGGATCAAACTTAAATCCACATACCCAAAATTGTCTCCTCCGA
AGAAAGGCTTGTCTCCAAGCTGCCCTTCCAAAGTCTTCAGAACTTCAAAG
AACTCCTTCTTAGCTGCCTCCTGCTCTTCTCCCTT
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