CB304414

Overview
NameCB304414
Unique NameCB304414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length397
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304414_ssr184 microsatellite CB304414_ssr184:184..195. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:264..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.103e-14
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = -1
Query:  248 DRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 394
            DRQAACNCLK A+ +I+G+  N+AAGLP +CGV +PYKISPSTDC  V+
Sbjct:   43 DRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.340e-14
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = -1
Query:  248 PDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 397
            PDRQAAC CLK AY +I G+    AA  P +CGV IPYKISPSTDCS+V+
Sbjct:   67 PDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.593e-13
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  248 PDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 397
            PDRQAACNCLK+   ++ G+ PN AA LP +CGV IPY+ISPST+C+ V+
Sbjct:   68 PDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.081e-13
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = -1
Query:  248 DRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 394
            DRQ AC CLK A G I GI    AAGLPS CGV IPYKISPSTDCS+V+
Sbjct:   66 DRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.635e-13
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = -1
Query:  248 DRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 394
            DRQ ACNCLK   G+I G+ PN AAGLP +CGV +PYKIS ST+C+ V+
Sbjct:   67 DRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.054e-13
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = -1
Query:  248 PDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 397
            PDRQAACNCLK+   ++ G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   42 PDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.054e-13
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = -1
Query:  248 PDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 397
            PDR+ ACNCLK+  G+I G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   42 PDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.300e-12
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = -1
Query:  248 DRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 394
            DR+AACNCLK+  G+I G+ PN AA LP +CGV +PYKIS ST+C+ V+
Sbjct:   43 DRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.004e-12
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = -1
Query:  248 PDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 397
            PDRQAACNCLK   G++ G+ P  A  LP +CGV +PYKIS ST+C+ V+
Sbjct:   66 PDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB304414 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.004e-12
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = -1
Query:  248 PDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 397
            PDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   60 PDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
The following BLAST results are available for this feature:
BLAST of CB304414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
LTP1_MORNI1.103e-1467.35Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_HELAN9.340e-1466.00Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU1.593e-1362.00Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP1_TOBAC2.081e-1371.43Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP_MALDO4.635e-1363.27Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUPE6.054e-1362.00Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_PRUAR6.054e-1362.00Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP1_PRUDO2.300e-1261.22Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP_PYRCO3.004e-1258.00Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP4_LENCU3.004e-1264.00Non-specific lipid-transfer protein 4 (Fragment) O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_E02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_E02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304414 ID=CB304414; Name=CB304414; organism=Citrus sinensis; type=EST; length=397bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATACCACAAAATAACTAT
AATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACATAA
AAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACAAGTGGAGA
CTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATTCTT
CTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCACCT
GACCCTAGAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTGACTC
CACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGGATT
GTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
back to top