CB304423

Overview
NameCB304423
Unique NameCB304423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length451
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11025 contig Csv1_Contig11025:282..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304423 vs. ExPASy Swiss-Prot
Match: FACR2_ARATH (Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana GN=FAR2 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 2.704e-39
Identity = 84/141 (59.57%), Postives = 111/141 (78.72%), Query Frame = -3
Query:   30 MLNKLVPVVGNISESNLGLEGDLAKVIANEVDVIINFAANTTLHERYDIAIDINPRGPSHVMNFAKKCKKIKVFVHMSTAYVNDGKRQGRIMEKPFYMGDTIARELNFNNSKIEPNLDVEKEIELAMK-SKKALENDEDAR 449
            ML KL+PV GNI +SN+GL+ D A+ IA EVDVIIN AANTT +ERYD+A+DIN RGP ++M FAKKCKK+K+F+ +STAYVN G+RQGRIMEKPF MGD IA E NF        LDV++E++LA++ ++K  +N ++A+
Sbjct:  201 MLTKLIPVTGNICDSNIGLQADSAEEIAKEVDVIINSAANTTFNERYDVALDINTRGPGNLMGFAKKCKKLKLFLQVSTAYVN-GQRQGRIMEKPFSMGDCIATE-NFLEGN-RKALDVDREMKLALEAARKGTQNQDEAQ 338          
BLAST of CB304423 vs. ExPASy Swiss-Prot
Match: FACR6_ARATH (Fatty acyl-CoA reductase 6, chloroplastic OS=Arabidopsis thaliana GN=FAR6 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.902e-25
Identity = 53/140 (37.86%), Postives = 89/140 (63.57%), Query Frame = -3
Query:   30 MLNKLVPVVGNISESNLGLEGDLAKVIANEVDVIINFAANTTLHERYDIAIDINPRGPSHVMNFAKKCKKIKVFVHMSTAYVNDGKRQGRIMEKPFYMGDTIARELNFNNSKIEPNLDVEKEIELAMKSKKALENDEDAR 449
            M  KL+PV+G+I E NLG++ ++A +I+ E+DVII+    TT  +RYD A+ +N  GP  +++F K C+K+K+F+H STAYV  GKR+G ++E P  +G+ I  +LN           ++ E++LA ++ +     E+ +
Sbjct:  154 MKRKLIPVIGDIEEDNLGIKSEIANMISEEIDVIISCGGRTTFDDRYDSALSVNALGPGRLLSFGKGCRKLKLFLHFSTAYVT-GKREGTVLETPLCIGENITSDLN-----------IKSELKLASEAVRKFRGREEIK 281          
BLAST of CB304423 vs. ExPASy Swiss-Prot
Match: FACR1_ARATH (Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana GN=FAR1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.032e-22
Identity = 62/128 (48.44%), Postives = 89/128 (69.53%), Query Frame = -3
Query:   75 MLNKLVPVVGNISESNLGLEG-DLAKVIANEVDVIINFAANTTLHERYDIAIDINPRGPSHVMNFAKKCKKIKVFVHMSTAYVNDGKRQGRIMEKPFYMGDTIA--RELNFNNSKIEPNLDVEKEIEL 449
            M  K+VPV G+IS  NLGL+  DL + + +E+D+IIN AA T   ERYDI + IN  G  +V+NFAKKC K ++ +H+STAY++ G++ G ++EKPF MG+T++  REL+ N   IE +L  +K  EL
Sbjct:   83 MREKIVPVPGDISIDNLGLKDTDLIQRMWSEIDIIINIAATTNFDERYDIGLGINTFGALNVLNFAKKCVKGQLLLHVSTAYIS-GEQPGLLLEKPFKMGETLSGDRELDIN---IEHDLMKQKLKEL 206          
BLAST of CB304423 vs. ExPASy Swiss-Prot
Match: FACR4_ARATH (Probable fatty acyl-CoA reductase 4 OS=Arabidopsis thaliana GN=FAR4 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.761e-22
Identity = 57/132 (43.18%), Postives = 87/132 (65.91%), Query Frame = -3
Query:   48 KLVPVVGNISESNLGLEG-DLAKVIANEVDVIINFAANTTLHERYDIAIDINPRGPSHVMNFAKKCKKIKVFVHMSTAYVNDGKRQGRIMEKPFYMGDTIARELNFNNSKIEPNLDVEKEIELAMKSKKALE 440
            K+VP+ G+IS  NLG++G DL + + NE+D+I+N AA T   ERYD+ + +N  GP +V+NFAKKC K ++ +H+STAYV  G++ G + EK F+MG+T+      N  +    L +E E+EL  +  K L+
Sbjct:   86 KVVPIPGDISVDNLGVKGSDLLQHMWNEIDIIVNVAATTNFDERYDVGLSVNTFGPLNVLNFAKKCVKGQLLLHVSTAYVR-GEKSGLLHEKTFHMGETL------NGHR---KLVIETEMELMKQKLKELQ 207          
BLAST of CB304423 vs. ExPASy Swiss-Prot
Match: FACR3_ARATH (Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.648e-20
Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = -3
Query:   96 KLVPVVGNISESNLGLEG-DLAKVIANEVDVIINFAANTTLHERYDIAIDINPRGPSHVMNFAKKCKKIKVFVHMSTAYVNDGKRQGRIMEKPFYMGDTI----ARELNFNNSKIEPNLD 440
            K+  V G+I   +LGL+  DLA  + ++VD I+N AA T   ERYD+A+ IN  G  +V+NFAK+C K+K+ VH+STAYV  G++ G IME P+ MG+T+      ++N+    ++  LD
Sbjct:   90 KITIVDGDICLEDLGLQDFDLAHEMIHQVDAIVNLAATTKFDERYDVALGINTLGALNVLNFAKRCAKVKILVHVSTAYV-CGEKSGLIMETPYRMGETLNGTTGLDINYEKKLVQEKLD 208          
BLAST of CB304423 vs. ExPASy Swiss-Prot
Match: FACR8_ARATH (Fatty acyl-CoA reductase 8 OS=Arabidopsis thaliana GN=FAR8 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.436e-18
Identity = 49/118 (41.53%), Postives = 77/118 (65.25%), Query Frame = -3
Query:   90 KLVPVVGNISESNLGL-EGDLAKVIANEVDVIINFAANTTLHERYDIAIDINPRGPSHVMNFAKKCKKIKVFVHMSTAYVNDGKRQGRIMEKPFYMGDTIARELNFNNSKIEPNLDVE 440
            K+VPV G+I+  +LG+ + +L + +  E+D+++N AA T   ERYDI + IN  G  +V+NFAKKC K ++ +H+STAYV  G++ G + EKPF M +      N N  +++ NL+ E
Sbjct:   86 KVVPVAGDIAMDHLGMKDSNLRERMQKEIDIVVNVAATTNFDERYDIGLGINTFGALNVLNFAKKCVKAQLLLHVSTAYV-CGEKPGLLPEKPFVMEEI----CNENGLQLDINLERE 198          
BLAST of CB304423 vs. ExPASy Swiss-Prot
Match: FACR5_ARATH (Probable fatty acyl-CoA reductase 5 OS=Arabidopsis thaliana GN=FAR5 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.655e-18
Identity = 51/139 (36.69%), Postives = 86/139 (61.87%), Query Frame = -3
Query:   36 MLNKLVPVVGNISESNLGL-EGDLAKVIANEVDVIINFAANTTLHERYDIAIDINPRGPSHVMNFAKKCKKIKVFVHMSTAYVNDGKRQGRIMEKPFYMGDTIARELNFNNSKIEPNLDVEKEIELAMKSKKALENDED 449
            +  K+V V G+I+   LG+ +  L + +  E+D+++N AA T   ERYD+ + IN  G  +V+NFAKKC K+++ +H+STAYV  G++ G I EKPF M      E   N + ++ ++++E+E+   MK +    N++D
Sbjct:   83 LYEKVVSVPGDIATDQLGINDSHLRERMQKEIDIVVNVAATTNFDERYDVGLGINTFGALNVLNFAKKCVKVQLLLHVSTAYV-CGEKPGLIPEKPFIM------EEIRNENGLQLDINLEREL---MKQRLKELNEQD 211          
BLAST of CB304423 vs. ExPASy Swiss-Prot
Match: FACR7_ARATH (Putative fatty acyl-CoA reductase 7 OS=Arabidopsis thaliana GN=FAR7 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.314e-11
Identity = 43/127 (33.86%), Postives = 70/127 (55.12%), Query Frame = -3
Query:   48 GLEGDLAKVIANEV----------DVIINFAANTTLHERYDIAIDINPRGPSHVMNFAKKCKKIKVFVHMSTAYVNDGKRQGRIMEKPFYMGDTIARELNFNNSKIEPNLDVEKEIELAMKSKKALE 398
            G  G LAKV+   +           +++  +   +  +RYD+A+ IN  G  +V+NFAKKC K K+ +H+ST YV  G+R G I+EK F MG+++       N K + +++ E+ +    KSK+  E
Sbjct:   18 GASGFLAKVLVERILRLQPNVKRLYLLVRASDKKSAEQRYDVALGINTFGAINVLNFAKKCVKPKLLLHVSTVYV-CGERPGHIVEKHFAMGESL-------NGKNKVDINTERRL-ADQKSKQFKE 135          
The following BLAST results are available for this feature:
BLAST of CB304423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
FACR2_ARATH2.704e-3959.57Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana... [more]
FACR6_ARATH2.902e-2537.86Fatty acyl-CoA reductase 6, chloroplastic OS=Arabi... [more]
FACR1_ARATH1.032e-2248.44Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana... [more]
FACR4_ARATH1.761e-2243.18Probable fatty acyl-CoA reductase 4 OS=Arabidopsis... [more]
FACR3_ARATH1.648e-2043.33Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana... [more]
FACR8_ARATH3.436e-1841.53Fatty acyl-CoA reductase 8 OS=Arabidopsis thaliana... [more]
FACR5_ARATH7.655e-1836.69Probable fatty acyl-CoA reductase 5 OS=Arabidopsis... [more]
FACR7_ARATH5.314e-1133.86Putative fatty acyl-CoA reductase 7 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_F03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_F03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304423 ID=CB304423; Name=CB304423; organism=Citrus sinensis; type=EST; length=451bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGCGTCTTCATCATTTTC
AAGGGCTTTTTTGGATTTCATAGCCAACTCTATTTCTTTTTCAACGTCCA
AATTTGGTTCAATTTTGGAGTTATTGAAGTTTAATTCCCTTGCTATCGTA
TCTCCCATGTAAAAGGGCTTTTCCATAATCCTTCCTTGTCTCTTTCCATC
ATTAACATATGCTGTCGACATGTGCACAAAAACCTTAATCTTCTTGCACT
TTTTCGCAAAATTCATGACATGGGAAGGTCCTCTTGGGTTTATATCGATA
GCAATGTCATATCTTTCGTGTAAGGTTGTATTAGCTGCAAAATTTATAAT
TACGTCGACTTCATTTGCGATTACTTTGGCCAAATCTCCTTCTAATCCAA
GGTTACTTTCACTTATATTTCCTACCACAGGAACCAATTTATTTAACATC
C
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