CB304430

Overview
NameCB304430
Unique NameCB304430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11660 contig Csv1_Contig11660:121..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304430 vs. ExPASy Swiss-Prot
Match: ERH_ARATH (Enhancer of rudimentary homolog OS=Arabidopsis thaliana GN=At5g10810 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.046e-38
Identity = 72/88 (81.82%), Postives = 83/88 (94.32%), Query Frame = -3
Query:  373 SRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 636
            SRATRTFMDY SI QAMDGICGLYERKLKE+NP++R+I+YD+ADLYNFIDGLAD+SALVYDHSI AYLPYDRQWIKQ+ F HLK++A+
Sbjct:   19 SRATRTFMDYDSIGQAMDGICGLYERKLKEINPSLRNISYDIADLYNFIDGLADLSALVYDHSISAYLPYDRQWIKQKAFHHLKRIAN 106          
BLAST of CB304430 vs. ExPASy Swiss-Prot
Match: ERH_DICDI (Enhancer of rudimentary homolog OS=Dictyostelium discoideum GN=erh PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.051e-22
Identity = 45/86 (52.33%), Postives = 67/86 (77.91%), Query Frame = -3
Query:  376 RATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA 633
            +++RTFMDY S++QA++GIC +YE++LK+  P  ++ITYD++ L+ FID LAD+S LVY   I AY PY+++WIK +   HL+KLA
Sbjct:   14 KSSRTFMDYESVNQAIEGICNMYEQRLKQERPNQKNITYDISQLFKFIDSLADLSCLVYTSHINAYTPYNKEWIKTKIINHLQKLA 99          
BLAST of CB304430 vs. ExPASy Swiss-Prot
Match: ERH_AEDAE (Enhancer of rudimentary homolog OS=Aedes aegypti PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.052e-18
Identity = 38/84 (45.24%), Postives = 59/84 (70.24%), Query Frame = -3
Query:  376 TRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA 627
            TRT+ DY S+++ M+G+C +YE  LK  NP    ITYD++ L++F+D LAD+S LVY  S   Y PY+++WIK++ +  L++ A
Sbjct:   16 TRTYSDYESVNECMEGVCKIYEEHLKRRNPNTPTITYDISQLFDFVDQLADLSCLVYQKSTNTYAPYNKEWIKEKIYVLLRQAA 99          
BLAST of CB304430 vs. ExPASy Swiss-Prot
Match: ERH_MOUSE (Enhancer of rudimentary homolog OS=Mus musculus GN=Erh PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.970e-18
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = -3
Query:  376 RTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA 624
            RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+S LVY    Q Y PY++ WIK++ +  L++ A
Sbjct:   17 RTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQA 99          
BLAST of CB304430 vs. ExPASy Swiss-Prot
Match: ERH_HUMAN (Enhancer of rudimentary homolog OS=Homo sapiens GN=ERH PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.970e-18
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = -3
Query:  376 RTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA 624
            RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+S LVY    Q Y PY++ WIK++ +  L++ A
Sbjct:   17 RTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQA 99          
BLAST of CB304430 vs. ExPASy Swiss-Prot
Match: ERH_BOVIN (Enhancer of rudimentary homolog OS=Bos taurus GN=ERH PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.970e-18
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = -3
Query:  376 RTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA 624
            RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+S LVY    Q Y PY++ WIK++ +  L++ A
Sbjct:   17 RTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQA 99          
BLAST of CB304430 vs. ExPASy Swiss-Prot
Match: ERH_DANRE (Enhancer of rudimentary homolog OS=Danio rerio GN=erh PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.797e-18
Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = -3
Query:  376 RTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA 624
            RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++F+D LAD+S LVY    Q Y PY++ WIK++ +  L++ A
Sbjct:   17 RTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFVDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQA 99          
BLAST of CB304430 vs. ExPASy Swiss-Prot
Match: ER_DROME (Protein enhancer of rudimentary OS=Drosophila melanogaster GN=e(r) PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.018e-17
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = -3
Query:  361 TRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH*INT 627
            TRT+ DY S+++ M+G+C +YE  LK  NP    ITYD++ L++FID + D+S +VY  S   Y PY++ WIK++ +  L++ A   NT
Sbjct:   16 TRTYCDYESVNECMEGVCKIYEEHLKRRNPNTPTITYDISQLFDFIDTMVDISCMVYQKSTNTYAPYNKDWIKEKIYVLLRQAAFSSNT 104          
BLAST of CB304430 vs. ExPASy Swiss-Prot
Match: ER_DROVI (Protein enhancer of rudimentary OS=Drosophila virilis GN=e(r) PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.330e-17
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = -3
Query:  376 TRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA 627
            TRT+ DY S+++ M+G+C +YE  LK  NP    ITYD++ L++FID L D+S LVY  S   Y PY++ WIK++ +  L++ A
Sbjct:   16 TRTYCDYESVNECMEGVCKIYEEHLKRRNPNTPTITYDISQLFDFIDTLIDISCLVYQKSTNTYAPYNKDWIKEKIYVLLRQAA 99          
BLAST of CB304430 vs. ExPASy Swiss-Prot
Match: ERH_TAESO (Enhancer of rudimentary homolog OS=Taenia solium GN=ERH PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.066e-14
Identity = 32/84 (38.10%), Postives = 55/84 (65.48%), Query Frame = -3
Query:  376 TRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA 627
            +R + DY +++Q ++G+C +YE +LK+ NP    ITYD++ L+ FID LAD+S L +  +   Y+P+ + WIK+  +  L+  A
Sbjct:   17 SRVWADYETLNQCLEGVCKIYEEQLKQQNPTAPTITYDISQLFKFIDQLADLSCLEFHPATGTYVPHTKDWIKENIYALLRNQA 100          
The following BLAST results are available for this feature:
BLAST of CB304430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ERH_ARATH1.046e-3881.82Enhancer of rudimentary homolog OS=Arabidopsis tha... [more]
ERH_DICDI1.051e-2252.33Enhancer of rudimentary homolog OS=Dictyostelium d... [more]
ERH_AEDAE2.052e-1845.24Enhancer of rudimentary homolog OS=Aedes aegypti P... [more]
ERH_MOUSE5.970e-1845.78Enhancer of rudimentary homolog OS=Mus musculus GN... [more]
ERH_HUMAN5.970e-1845.78Enhancer of rudimentary homolog OS=Homo sapiens GN... [more]
ERH_BOVIN5.970e-1845.78Enhancer of rudimentary homolog OS=Bos taurus GN=E... [more]
ERH_DANRE7.797e-1844.58Enhancer of rudimentary homolog OS=Danio rerio GN=... [more]
ER_DROME1.018e-1742.70Protein enhancer of rudimentary OS=Drosophila mela... [more]
ER_DROVI1.330e-1745.24Protein enhancer of rudimentary OS=Drosophila viri... [more]
ERH_TAESO3.066e-1438.10Enhancer of rudimentary homolog OS=Taenia solium G... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_F12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_F12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304430 ID=CB304430; Name=CB304430; organism=Citrus sinensis; type=EST; length=638bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAACAATCTAGCAATCAAG
TTACACATCATATATATAGTTCCATATCAAATGTCAGAAACTTTTTAGAT
TTGCGCGCTCTCTGGCTATGACGCGTCAGCTTACATTGGACCAATAACTA
TCGATAAAACTGTTCTTCAATAAATCTCCCTTCCTGTGACACAGGAAGCA
CAGGAAGAGAATATGATTGCCACATTCCGCAATCTTCTGCCCAAGGGCAA
AACCAAAATAAGACTCTGATTCTACAATTTGTTTACATCTTCCGACTACC
ATGTTCAGGGCCAGAGAGAAATTAGGAAACAACAAAACACTGGCGTGGCT
GAATATAATAAGTATTTATTCAATGCGCCAACTTCTTAAGATGTTGAAAT
GTCCTTTGTTTGATCCACTGTCTGTCATACGGCAAATAAGCCTGAATTGA
GTGATCGTATACTAATGCACTCATGTCTGCAAGACCATCAATGAAGTTGT
AGAGATCTGCAACATCATAAGTGATGTCTCTGATTGCTGGATTTAACTCC
TTAAGCTTCCTTTCATAAAGTCCACATATACCATCCATAGCTTGGCTTAT
TGAACCATAATCCATGAAGGTTCTTGTTGCTCTGCTTG
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