CB304435 | Citrus Genome Database

Overview


Name	CB304435
Unique Name	CB304435
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	570

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2117	contig	Csv1_Contig2117:159..728.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS15_PICMA (40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 1.867e-62
Identity = 119/137 (86.86%), Postives = 124/137 (90.51%), Query Frame = -1

Query:  160 KRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 570
            KRTFKKFS+RGVDLDALLDM+++ELVKLF ARARRRFQRGLKR+PMALI            GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   15 KRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKRQPMALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

[Close]

BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS15_ELAOL (40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.185e-62
Identity = 120/137 (87.59%), Postives = 122/137 (89.05%), Query Frame = -1

Query:  160 KRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 570
            KRTF+KFS+RGVDLD LLDM  DELVKLF ARARRRFQRGLKRKPMALI           PGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   17 KRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS15_ORYSJ (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 5.434e-62
Identity = 117/137 (85.40%), Postives = 123/137 (89.78%), Query Frame = -1

Query:  160 KRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 570
            KRTF+K+S+RGVDLDALLDMS D+LV+LF ARARRRFQRGLKRKPMALI            GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   18 KRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

[Close]

BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS154_ARATH (40S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 3.522e-61
Identity = 116/137 (84.67%), Postives = 121/137 (88.32%), Query Frame = -1

Query:  160 KRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 570
            KRTFKKF+F+GVDLDALLDMS D+LVKLFS+R RRRF RGL RKPMALI            GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:   16 KRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS151_ARATH (40S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 3.522e-61
Identity = 116/137 (84.67%), Postives = 121/137 (88.32%), Query Frame = -1

Query:  160 KRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 570
            KRTFKKF+F+GVDLDALLDMS D+LVKLFS+R RRRF RGL RKPMALI            GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:   16 KRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS153_ARATH (40S ribosomal protein S15-3 OS=Arabidopsis thaliana GN=RPS15C PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 9.591e-59
Identity = 113/137 (82.48%), Postives = 118/137 (86.13%), Query Frame = -1

Query:  160 KRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 570
            KRTFKKFSFRGVDLDALLDMS D+LVKLF +R RRRF RGL RKPMALI            GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct:   14 KRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150

[Close]

BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS155_ARATH (40S ribosomal protein S15-5 OS=Arabidopsis thaliana GN=RPS15E PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 8.119e-58
Identity = 113/137 (82.48%), Postives = 118/137 (86.13%), Query Frame = -1

Query:  160 KRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 570
            KRTFKKFSFRGVDLDALLDMS ++LVK FS+R RRRF RGL RKPMALI            GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct:   13 KRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 149

[Close]

BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS152_ARATH (40S ribosomal protein S15-2 OS=Arabidopsis thaliana GN=RPS15B PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 7.599e-56
Identity = 106/137 (77.37%), Postives = 116/137 (84.67%), Query Frame = -1

Query:  160 KRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 570
            KRTFKKFSF+GVDLDALLDM  D+LV+LF +R RRR  RGL RKPMALI            GEKPE VRTHLRNM+I+PEMIGSIIGVYNGKTFNQ+EIKPEMIGHYLAEFSI+YKPV+HG+PG GATHSSRFIPLK
Sbjct:   16 KRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152

[Close]

BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS15_PODAN (40S ribosomal protein S15 OS=Podospora anserina GN=RPS15 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.903e-52
Identity = 98/137 (71.53%), Postives = 115/137 (83.94%), Query Frame = -1

Query:  160 KRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 570
            KRTF+KFS+RGVDLDALLD+++DEL  +  ARARR+  RGLKR+PM LI           P EKP+ V+THLR+MI+VPEMIGS++G+Y+GK FNQVEIKPEM+GHYL EFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   16 KRTFRKFSYRGVDLDALLDLTSDELRDVVHARARRKINRGLKRRPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVVGIYSGKEFNQVEIKPEMVGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of CB304435 vs. ExPASy Swiss-Prot
Match: RS15_RAT (40S ribosomal protein S15 OS=Rattus norvegicus GN=Rps15 PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 1.937e-51
Identity = 98/137 (71.53%), Postives = 116/137 (84.67%), Query Frame = -1

Query:  160 KRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIXXXXXXXXXXXPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 570
            KRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+           P EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    9 KRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145

The following BLAST results are available for this feature:

BLAST of CB304435 vs. ExPASy Swiss-Prot

BLAST of CB304435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83


Match Name	E-value	Identity	Description
RS15_PICMA	1.867e-62	86.86	40S ribosomal protein S15 OS=Picea mariana GN=RPS1...	[more]
RS15_ELAOL	3.185e-62	87.59	40S ribosomal protein S15 OS=Elaeis oleifera GN=RP...	[more]
RS15_ORYSJ	5.434e-62	85.40	40S ribosomal protein S15 OS=Oryza sativa subsp. j...	[more]
RS154_ARATH	3.522e-61	84.67	40S ribosomal protein S15-4 OS=Arabidopsis thalian...	[more]
RS151_ARATH	3.522e-61	84.67	40S ribosomal protein S15-1 OS=Arabidopsis thalian...	[more]
RS153_ARATH	9.591e-59	82.48	40S ribosomal protein S15-3 OS=Arabidopsis thalian...	[more]
RS155_ARATH	8.119e-58	82.48	40S ribosomal protein S15-5 OS=Arabidopsis thalian...	[more]
RS152_ARATH	7.599e-56	77.37	40S ribosomal protein S15-2 OS=Arabidopsis thalian...	[more]
RS15_PODAN	3.903e-52	71.53	40S ribosomal protein S15 OS=Podospora anserina GN...	[more]
RS15_RAT	1.937e-51	71.53	40S ribosomal protein S15 OS=Rattus norvegicus GN=...	[more]

Pages

Properties


Property Name	Value
Genbank description	FLAVEDO0001_IIIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_G10 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304435 ID=CB304435; Name=CB304435; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTAACAACTCAAACGCTA
GTATTTAGTCCAACAACCAAAAAAATGTAACCACAAAAAATTTGATCAAC
TTCAATGTTTTCTGAAAATAACAATAAGCTAAAATTCCAGATATCCAGCA
TACATCTCACTTAAGAGGAATGAACCTTGAGGAATGGGTAGCACCAATAC
CAGGTCTACCGTGCTTCACAGGCTTGTATGAGATAGAGAACTCAGCCAGG
TAATGCCCAATCATTTCCGGCTTAATTTCAACCTGATTAAAGGTCTTGCC
ATTGTACACTCCAATAATGCTTCCAATCATTTCAGGAACAATGATCATGT
TTCGCAAATGGGTGCGAACTGGTTCAGGCTTCTCACCAGGCGGAGCCTCC
CTTTTCGCCTTGCGAGGCTTCTTGATCAAAGCCATGGGCTTCCTCTTTAA
ACCCCTCTGAAACCTTCTGCGCGCACGTGCACTGAAGAGCTTGACGAGCT
CATCATTGGACATATCAAGAAGAGCGTCCAAATCCACGCCTCTGAAACTG
AACTTCTTGAACGTTCTCTT