CB304444

Overview
NameCB304444
Unique NameCB304444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304444_ssr174 microsatellite CB304444_ssr174:174..191. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:451..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.184e-38
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            ET+ FA ARIDWKETP+AHVFKAD+PGL+         +G ILQISGER+KEQEEK D+WHRVERSSGKFLRRFRLPDN K EQ+KASMENGVLTVT           K+I+ISG
Sbjct:   47 ETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161
[Close]
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.396e-37
Identity = 77/115 (66.96%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            ET+ FA ARIDWKETP+AHVFKAD+PGL+         +G +LQISGERSKEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+++G
Sbjct:   47 ETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161
[Close]
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.062e-37
Identity = 77/115 (66.96%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            ET+ F N  IDWKETPQAHVFKADLPGL+         EG++LQISGER+KE+EEKNDKWHRVERSSGKFLRRFRLP+N KV++VKA+M NGV+TVT           KAI+ISG
Sbjct:   43 ETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157
[Close]
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.062e-37
Identity = 76/115 (66.09%), Postives = 91/115 (79.13%), Query Frame = -3 
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            +T+ FANAR+DWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+N KV+QVKASMENGVLTVT           KAIEISG
Sbjct:   35 DTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149
[Close]
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.305e-37
Identity = 78/115 (67.83%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            ETS FAN RIDWKETP+AHVFKADLPGL+         E R+LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+N K++QVKASMENGVLTVT           K+IEISG
Sbjct:   40 ETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154
[Close]
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.928e-37
Identity = 78/115 (67.83%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            ETS FAN RIDWKETP+AHVFKADLPGL+         E R+LQISGER+ E+E+KNDKW RVERSSGKF+RRFRLP+N K++QVKASMENGVLTVT           K+IEISG
Sbjct:   40 ETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154
[Close]
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.048e-37
Identity = 76/115 (66.09%), Postives = 90/115 (78.26%), Query Frame = -3 
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            +T+ FANARIDWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+N KV+QVKA MENGVLTVT           KAIEISG
Sbjct:   36 DTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150
[Close]
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.543e-36
Identity = 76/115 (66.09%), Postives = 88/115 (76.52%), Query Frame = -3 
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            + + FA ARIDWKETP+ HVFKAD+PGL+         +G ILQISGERS+EQEEK+DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+ISG
Sbjct:   45 DAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159
[Close]
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.016e-36
Identity = 75/115 (65.22%), Postives = 90/115 (78.26%), Query Frame = -3 
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            +T+ FANARIDWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+N KV+QVKA +ENGVLTVT           KAIEISG
Sbjct:   36 DTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150
[Close]
BLAST of CB304444 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.438e-36
Identity = 73/115 (63.48%), Postives = 89/115 (77.39%), Query Frame = -3 
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            ET+ FANAR+DWKETP+AHVFK DLPG++         +G +L +SGERS+E+E+KNDKWHRVERSSGKF+RRFRLP++ KVE+VKA +ENGVLTVT           KAIEISG
Sbjct:   37 ETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151
The following BLAST results are available for this feature:
BLAST of CB304444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS17A_ORYSJ8.184e-3868.7017.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS181_ORYSJ1.396e-3766.9618.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_DAUCA4.062e-3766.9617.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS16C_ORYSJ4.062e-3766.0916.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP12_SOLPE5.305e-3767.8317.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_SOLPE6.928e-3767.8317.7 kDa class I heat shock protein OS=Solanum per... [more]
HS16B_ORYSJ9.048e-3766.0916.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS177_ORYSJ1.543e-3666.0917.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16A_ORYSJ2.016e-3665.2216.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS16A_WHEAT3.438e-3663.4816.9 kDa class I heat shock protein 1 OS=Triticum ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_H11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_H11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304444 ID=CB304444; Name=CB304444; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATTACAAAATATATTTTA
TTGCATCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACTG
GCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAACA
GGGGGGAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTT
GCTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACAT
TTACACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTC
TTCTCCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCT
GGCCTTAACCTGCTCCACCTTAACATTGTCGGGCAACCTGAACCTCCTCA
GGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCT
TCCTGCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTC
AACCTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGA
ATACATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAAT
TGGGATGTTTCCC
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