CB304495

Overview
NameCB304495
Unique NameCB304495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304495 vs. ExPASy Swiss-Prot
Match: TPC2L_DICDI (Trafficking protein particle complex subunit 2-like protein OS=Dictyostelium discoideum GN=trappc2l PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.960e-32
Identity = 65/135 (48.15%), Postives = 98/135 (72.59%), Query Frame = -2
Query:  224 AVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDL-DVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKS 616
            A+VG  NNPL+IQ F+ +   ++ LKLH+IVHCSLD+++++  + KK     ++ +LGLLYPTE+YKVYGYLTNTK+KFI+V  D  D++D+D++ FF+R    +I+  SNPF+ P  K+ S+ F + V+ +V S
Sbjct:    8 AIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKKLP---SDMYLGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLKLFFKRLQTLFINTTSNPFYKPNSKVESKKFLQEVTNLVPS 139          
BLAST of CB304495 vs. ExPASy Swiss-Prot
Match: TPC2L_RAT (Trafficking protein particle complex subunit 2-like protein OS=Rattus norvegicus GN=Trappc2l PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.098e-29
Identity = 62/131 (47.33%), Postives = 95/131 (72.52%), Query Frame = -2
Query:  230 AVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIV 616
            AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ PG +I SR F   V++++
Sbjct:    6 AVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPGDRIQSRAFDTMVTSMM 135          
BLAST of CB304495 vs. ExPASy Swiss-Prot
Match: TPC2L_XENTR (Trafficking protein particle complex subunit 2-like protein OS=Xenopus tropicalis GN=trappc2l PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.352e-29
Identity = 62/131 (47.33%), Postives = 93/131 (70.99%), Query Frame = -2
Query:  230 AVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIV 616
            AV+  +N PLYI+S T  ++ LK H+ VH SLDVVDE+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ PG  I SR F   V++++
Sbjct:    6 AVIAKENYPLYIRS-TPTENQLKFHYTVHTSLDVVDEKISAMGKAVMDQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRSMFRKLHNSYTDVMCNPFYNPGDPIQSRAFDNTVTSMM 135          
BLAST of CB304495 vs. ExPASy Swiss-Prot
Match: TPC2L_MOUSE (Trafficking protein particle complex subunit 2-like protein OS=Mus musculus GN=Trappc2l PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.352e-29
Identity = 62/131 (47.33%), Postives = 94/131 (71.76%), Query Frame = -2
Query:  230 AVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIV 616
            AV+  +N PLYI+S T  +  LK H++VH SLDVVDE+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ PG +I SR F   V++++
Sbjct:    6 AVIAKENYPLYIRS-TPTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPGDRIQSRAFDTMVTSMM 135          
BLAST of CB304495 vs. ExPASy Swiss-Prot
Match: TPC2L_BOVIN (Trafficking protein particle complex subunit 2-like protein OS=Bos taurus GN=TRAPPC2L PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.034e-28
Identity = 61/131 (46.56%), Postives = 94/131 (71.76%), Query Frame = -2
Query:  230 AVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIV 616
            AV+  +N PLYI+S    ++ LK H++VH SLDVVDE+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ PG +I SR F   V++++
Sbjct:    6 AVIAKENYPLYIRSIP-TENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPGDRIQSRAFDGMVTSMM 135          
BLAST of CB304495 vs. ExPASy Swiss-Prot
Match: TPC2L_TAEGU (Trafficking protein particle complex subunit 2-like protein OS=Taeniopygia guttata GN=TRAPPC2L PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.531e-28
Identity = 61/131 (46.56%), Postives = 93/131 (70.99%), Query Frame = -2
Query:  230 AVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIV 616
            AV+  +N PLYI+S    ++ LK H+ VH SLDVVDE+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ PG +I SR F   V++++
Sbjct:    6 AVIAKENYPLYIRS-VPTENELKFHYTVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDIMCNPFYNPGDRIHSRAFDTMVNSMM 135          
BLAST of CB304495 vs. ExPASy Swiss-Prot
Match: TPC2L_HUMAN (Trafficking protein particle complex subunit 2-like protein OS=Homo sapiens GN=TRAPPC2L PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.531e-28
Identity = 62/132 (46.97%), Postives = 96/132 (72.73%), Query Frame = -2
Query:  230 AVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKI-TSRTFAERVSTIV 616
            AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H +Y D + NPF+ PG +I +SR F   V++++
Sbjct:    6 AVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPGDRIQSSRAFDNMVTSMM 136          
BLAST of CB304495 vs. ExPASy Swiss-Prot
Match: TPC2L_SALSA (Trafficking protein particle complex subunit 2-like protein OS=Salmo salar GN=trappc2l PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.937e-27
Identity = 59/131 (45.04%), Postives = 90/131 (68.70%), Query Frame = -2
Query:  230 AVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIV 616
            AV+  +N PLYI+S     + LK H+ VH SLDVV+E+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+ FR+ H ++ D + NPF+ PG  I S+ F   VS ++
Sbjct:    6 AVIAKENYPLYIRS-VPVQNELKFHYTVHTSLDVVEEKISAVGKAMADQRELYLGLLYPTEDYKVYGYVTNSKVKFVIVVDSSNTSLRDNEIRSMFRKLHNSFTDVMCNPFYNPGDTIQSKAFDSMVSAMM 135          
BLAST of CB304495 vs. ExPASy Swiss-Prot
Match: TPC2L_PONAB (Trafficking protein particle complex subunit 2-like protein OS=Pongo abelii GN=TRAPPC2L PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.046e-16
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = -2
Query:  230 AVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIV 616
            AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LGLLYPTE+YK+                            FR+ H +Y D + NPF+ PG +I SR F   V++++
Sbjct:    6 AVIAKENYPLYIRS-TPTENKLKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKM----------------------------FRKLHNSYTDVMCNPFYNPGDRIQSRAFDNMVTSMM 105          
The following BLAST results are available for this feature:
BLAST of CB304495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TPC2L_DICDI3.960e-3248.15Trafficking protein particle complex subunit 2-lik... [more]
TPC2L_RAT4.098e-2947.33Trafficking protein particle complex subunit 2-lik... [more]
TPC2L_XENTR5.352e-2947.33Trafficking protein particle complex subunit 2-lik... [more]
TPC2L_MOUSE5.352e-2947.33Trafficking protein particle complex subunit 2-lik... [more]
TPC2L_BOVIN2.034e-2846.56Trafficking protein particle complex subunit 2-lik... [more]
TPC2L_TAEGU4.531e-2846.56Trafficking protein particle complex subunit 2-lik... [more]
TPC2L_HUMAN4.531e-2846.97Trafficking protein particle complex subunit 2-lik... [more]
TPC2L_SALSA2.937e-2745.04Trafficking protein particle complex subunit 2-lik... [more]
TPC2L_PONAB3.046e-1637.21Trafficking protein particle complex subunit 2-lik... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_F03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_F03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304495 ID=CB304495; Name=CB304495; organism=Citrus sinensis; type=EST; length=617bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTCACAATCACTTGCTTTAT
ATTTGGTACAAGTCAGATCCTGAGTTCCTTGAGAAAGAACATAAATGGTA
CAATATCTGTTCAATTCCTAATTGTAGCTGAGAAAAGAACTGAGGAAATG
AAAACAATTGTCAGGAGATTCAAAAGGTTCAATCTTACACCAGCAGCAAT
TAACCAGCTGAACTCAACCCAAATGACTTGACTATGGTGCTTACTCTCTC
TGCAAATGTTCTGGATGTTATCTTTTTTCCAGGCACGTGAAATGGGTTTG
AAACGGCATCTATATATGCAGCATGGAACCTCCTGAAGAAATTTCTCACG
TCAGCATCTCTGACATCTAAATCTGTAGTCACTAAGATAAACTTCACCTT
TGTATTAGTCAAATAGCCGTACACTTTATAGTTTTCAGTTGGATAGAGTA
AACCCAAAAACGTCTCGTTCAGAGTCGGCCCAGATTTCTTGGGATTGTTA
ACACGTTCGTCGACGACATCGAGAGAGCAGTGAACGATGTGATGGAGCTT
GAGGGCGTCATCTGCTTCAGTGAAGCTCTGTATGTAGAGCGGATTGTTCT
GATGCCCAACGACAGCG
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