CB304529

Overview
NameCB304529
Unique NameCB304529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig361 contig Csv1_Contig361:547..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304529 vs. ExPASy Swiss-Prot
Match: FKB70_ARATH (70 kDa peptidyl-prolyl isomerase OS=Arabidopsis thaliana GN=ROF1 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.538e-23
Identity = 49/60 (81.67%), Postives = 58/60 (96.67%), Query Frame = -1
Query:  234 AQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMS 413
            AQAY++++DLDLAEFD+KKALEIDP+NR+VKLE K LKEKMKE+NKKEAKFYGNMFAK+S
Sbjct:  490 AQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRLKEKMKEFNKKEAKFYGNMFAKLS 549          
BLAST of CB304529 vs. ExPASy Swiss-Prot
Match: FKB70_WHEAT (70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.484e-22
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = -1
Query:  204 AQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMSMFGSAESNKA 413
            AQAY Q+ADL+LAE DIKKALEIDP+NRDVKL YKTLKEK+KE NKK+AKFY NMF+KM+   SAE +KA
Sbjct:  491 AQAYTQLADLELAEVDIKKALEIDPENRDVKLTYKTLKEKIKEINKKDAKFYSNMFSKMTK-PSAEESKA 559          
The following BLAST results are available for this feature:
BLAST of CB304529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FKB70_ARATH6.538e-2381.6770 kDa peptidyl-prolyl isomerase OS=Arabidopsis th... [more]
FKB70_WHEAT2.484e-2275.7170 kDa peptidyl-prolyl isomerase OS=Triticum aesti... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_B09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304529 ID=CB304529; Name=CB304529; organism=Citrus sinensis; type=EST; length=413bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGAAAGGTCCATTACAAC
TTCTCATTCTGTAAGGCAAACGACCCAACAAGTCCTACAATCCATGGAAT
TGGAACACAAAAACCAGCAATTAATATATATCTAAAAATCAAATTGATTA
TACTTCAGTCATGCCTTGCTGTCTACGCTCATGGGCTCTGCCTCCTTGGG
CTCTGCTTTATTGGATTCAGCAGATCCAAACATACTCATCTTCGCAAACA
TGTTGCCATAAAACTTAGCCTCTTTTTTGTTGTATTCCTTCATCTTCTCC
TTCAAAGTTTTGTACTCCAACTTGACATCCCTGTTATCAGGATCAATCTC
AAGTGCTTTCTTGATATCAAACTCTGCCAAATCTAAATCTGCCATCTGAA
TGTATGCCTGAGC
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