CB304561

Overview
NameCB304561
Unique NameCB304561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length424
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig252 contig Csv1_Contig252:69..492. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304561 vs. ExPASy Swiss-Prot
Match: CCS_CITSI (Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.420e-49
Identity = 93/109 (85.32%), Postives = 93/109 (85.32%), Query Frame = -1
Query:   98 MIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRLDIVTKCPVPLVKMMGNLALETI 424
            MIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGF                LFGHASNSSRLDIVTKCPVPLVKMMGNLALETI
Sbjct:  395 MIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFLSSRLSLAELAGLSLSLFGHASNSSRLDIVTKCPVPLVKMMGNLALETI 503          
BLAST of CB304561 vs. ExPASy Swiss-Prot
Match: NXS_SOLTU (Neoxanthin synthase, chloroplastic OS=Solanum tuberosum GN=NXS PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.801e-36
Identity = 71/109 (65.14%), Postives = 82/109 (75.23%), Query Frame = -1
Query:   98 MIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRLDIVTKCPVPLVKMMGNLALETI 424
            MIRG  L+ +VWNGLWP+DRRC  E YSFGMETLLKLDLKGTRR FDAFFDL+P YW GF                LFGH SN +RLDIVTKCPVPLV+++GNLA+E++
Sbjct:  390 MIRGSQLYHRVWNGLWPLDRRCIGECYSFGMETLLKLDLKGTRRLFDAFFDLDPKYWQGFLSSRLSVKELAILSLCLFGHGSNLTRLDIVTKCPVPLVRLIGNLAIESL 498          
BLAST of CB304561 vs. ExPASy Swiss-Prot
Match: CCS_CAPAN (Capsanthin/capsorubin synthase, chromoplast OS=Capsicum annuum GN=CCS PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.794e-35
Identity = 70/109 (64.22%), Postives = 81/109 (74.31%), Query Frame = -1
Query:   98 MIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRLDIVTKCPVPLVKMMGNLALETI 424
            MIRG  L+ +VWNGLWP DRR  RE Y FGMETLLKLDL+GTRR FDAFFD++P YWHGF                LFGHASN +RLDIVTKC VPLVK++GNLA+E++
Sbjct:  390 MIRGSQLYHRVWNGLWPSDRRRVRECYCFGMETLLKLDLEGTRRLFDAFFDVDPKYWHGFLSSRLSVKELAVLSLYLFGHASNLARLDIVTKCTVPLVKLLGNLAIESL 498          
BLAST of CB304561 vs. ExPASy Swiss-Prot
Match: LCYB_ARATH (Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.170e-27
Identity = 59/103 (57.28%), Postives = 69/103 (66.99%), Query Frame = -1
Query:  113 IRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRLDIVTKCPVPLVKMMGNL 421
            +RG  L  +VW  LWPI+RR  REF+ FGM+ LLKLDL  TRRFFDAFFDL P+YWHGF                LF HASN+SRL+I+TK  VPL KM+ NL
Sbjct:  394 LRGDQLSAEVWRDLWPIERRRQREFFCFGMDILLKLDLDATRRFFDAFFDLQPHYWHGFLSSRLFLPELLVFGLSLFSHASNTSRLEIMTKGTVPLAKMINNL 496          
BLAST of CB304561 vs. ExPASy Swiss-Prot
Match: LCYB_SOLLC (Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.385e-26
Identity = 57/101 (56.44%), Postives = 64/101 (63.37%), Query Frame = -1
Query:  113 GRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRLDIVTKCPVPLVKMMGNL 415
            G  L   VW  LWPI+RR  REF+ FGM+ LLKLDL  TRRFFDAFFDL P YWHGF                LF HASN+SR +I+TK  VPLV M+ NL
Sbjct:  395 GNELSTAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGLSLFSHASNTSRFEIMTKGTVPLVNMINNL 495          
BLAST of CB304561 vs. ExPASy Swiss-Prot
Match: LCYB_CAPAN (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum annuum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.430e-25
Identity = 57/101 (56.44%), Postives = 65/101 (64.36%), Query Frame = -1
Query:  113 GRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRLDIVTKCPVPLVKMMGNL 415
            G  L   VW  LWPI+RR  REF+ FGM+ LLKLDL  TRRFFDAFFDL P YWHGF                LF HASN+SRL+I+TK  +PLV M+ NL
Sbjct:  393 GDELSAAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGLSLFSHASNTSRLEIMTKGTLPLVHMINNL 493          
BLAST of CB304561 vs. ExPASy Swiss-Prot
Match: LCYB_NARPS (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=LCY1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.868e-25
Identity = 55/103 (53.40%), Postives = 66/103 (64.08%), Query Frame = -1
Query:  113 IRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRLDIVTKCPVPLVKMMGNL 421
            + G  L   VW  LWPI+RR  REF+ FGM+ LLKLDL+GTRRFFDAFFDL P YWHGF                LF HASN+ +L+I+ K  +PLV M+ NL
Sbjct:  396 LSGNDLSADVWKDLWPIERRRQREFFCFGMDILLKLDLEGTRRFFDAFFDLEPRYWHGFLSSRLFLPELVPFGLSLFSHASNTCKLEIMAKGTLPLVNMINNL 498          
BLAST of CB304561 vs. ExPASy Swiss-Prot
Match: LCYB_TOBAC (Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.186e-25
Identity = 56/105 (53.33%), Postives = 66/105 (62.86%), Query Frame = -1
Query:  101 GRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFXXXXXXXXXXXXXXXXLFGHASNSSRLDIVTKCPVPLVKMMGNLALET 415
            G  L   VW  LWPI+RR  REF+ FGM+ LLKLDL  TRRFFDAFFDL P YWHGF                LF  ASN+SR++I+TK  +PLV M+ NL  +T
Sbjct:  395 GNELSAAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLYLPELIFFGLSLFSRASNTSRIEIMTKGTLPLVNMINNLLQDT 499          
The following BLAST results are available for this feature:
BLAST of CB304561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CCS_CITSI1.420e-4985.32Capsanthin/capsorubin synthase, chromoplast OS=Cit... [more]
NXS_SOLTU1.801e-3665.14Neoxanthin synthase, chloroplastic OS=Solanum tube... [more]
CCS_CAPAN5.794e-3564.22Capsanthin/capsorubin synthase, chromoplast OS=Cap... [more]
LCYB_ARATH1.170e-2757.28Lycopene beta cyclase, chloroplastic OS=Arabidopsi... [more]
LCYB_SOLLC8.385e-2656.44Lycopene beta cyclase, chloroplastic OS=Solanum ly... [more]
LCYB_CAPAN1.430e-2556.44Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_NARPS1.868e-2553.40Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_TOBAC3.186e-2553.33Lycopene beta cyclase, chloroplastic OS=Nicotiana ... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_F02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_F02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304561 ID=CB304561; Name=CB304561; organism=Citrus sinensis; type=EST; length=424bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTGTATTCATAACATGTTA
CTGTGTACTGCAAGAGACGCTAATTATTCAAGAACATTTAATCTTCAAAT
GGTTTCAAGGGCAAGATTCCCCATCATTTTAACCAGAGGAACAGGGCACT
TGGTAACAATATCCAACCTGGAAGAATTCGAGGCGTGTCCAAAGAGAGAC
AAGCTTAGGCCAGCAAGCTCTGCAAGAGACAACCTTGAGGACAGAAACCC
ATGCCAGTAGTAAGGATTCAAATCAAAGAAAGCATCAAAGAATCTCCTAG
TCCCCTTCAAATCCAGCTTCAACAAAGTCTCCATACCAAATGAATAAAAC
TCCCTATTGCATCTTCTGTCAATTGGCCACAACCCATTCCACACTTTCTG
ATGAAGTGGCCTGCCTCTGATCAT
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