CB304579

Overview
NameCB304579
Unique NameCB304579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304579_ssr178 microsatellite CB304579_ssr178:178..187. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2589 contig Csv1_Contig2589:503..1070. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304579 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.145e-20
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = -2
Query:  328 TATCVDIFLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 483
            TA C+DI +A+ILPPLGVFLKFGC  EFWICLLLT LGYIPGIIYA+YAITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of CB304579 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.145e-20
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = -2
Query:  328 TATCVDIFLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 483
            TA C+DI +A+ILPPLGVFLKFGC  EFWICLLLT LGYIPGIIYA+YAITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of CB304579 vs. ExPASy Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.146e-19
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = -2
Query:  328 MADGSTATCVDIFLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 498
            MAD STATC+DI LA+ILPPLGVF KFGC  EFWICLLLT  GY+PGIIYAV+ ITK
Sbjct:    1 MAD-STATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56          
BLAST of CB304579 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = -2
Query:  328 STATCVDIFLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 486
            STAT V+I LA+ILPPLGVFLKFGCK EFWICL+LT+ GY+PGI+YA+Y ITK
Sbjct:    2 STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54          
BLAST of CB304579 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.703e-19
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = -2
Query:  328 STATCVDIFLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 486
            STAT VDI +A++LPPLGVFL+FGC  EFWICL+LT+LGYIPGIIYA+Y +TK
Sbjct:    2 STATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54          
BLAST of CB304579 vs. ExPASy Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 34/51 (66.67%), Postives = 45/51 (88.24%), Query Frame = -2
Query:  334 STATCVDIFLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 486
            ++AT +++ LA+ILPP+GVFL++G   EFWICLLLT+LGYIPGIIYAVY +
Sbjct:    2 ASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVL 52          
BLAST of CB304579 vs. ExPASy Swiss-Prot
Match: OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = -2
Query:  334 MADGSTATCVDIFLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 498
            MA G   T ++I LA+ILPPLGVFL+FGC   EF ICLLLTILGY+PGIIYAVY +
Sbjct:    1 MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVL 56          
BLAST of CB304579 vs. ExPASy Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.230e-14
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = -2
Query:  334 TATCVDIFLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 483
            +AT +++ LA+ILPP+GVFL++    EFWICLLLTILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of CB304579 vs. ExPASy Swiss-Prot
Match: ESI3_LOPEL (Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum elongatum GN=ESI3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.230e-14
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = -2
Query:  334 TATCVDIFLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 483
            +AT +++ LA+ILPP+GVFL++    EFWICLLLTILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of CB304579 vs. ExPASy Swiss-Prot
Match: PMP3_DEBHA (Plasma membrane proteolipid 3 OS=Debaryomyces hansenii GN=PMP3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.092e-13
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = -2
Query:  328 TCVDIF---LAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 477
            TC DIF   +A+ILPPLGVFL+ GC + FWI ++LTILGYIPGII+A+Y I K
Sbjct:    4 TCSDIFKIIIAIILPPLGVFLERGCASSFWINIVLTILGYIPGIIHALYVILK 56          
The following BLAST results are available for this feature:
BLAST of CB304579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
LTI6B_ORYSJ5.145e-2082.69Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI5.145e-2082.69Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
LTI6A_ORYSJ1.146e-1978.95Hydrophobic protein LTI6A OS=Oryza sativa subsp. j... [more]
RCI2B_ARATH5.688e-1977.36Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
RCI2A_ARATH9.703e-1975.47Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
LT02_HORVU2.921e-1566.67Low temperature-induced protein lt101.2 OS=Hordeum... [more]
OSR8_ORYSJ4.983e-1569.64Hydrophobic protein OSR8 OS=Oryza sativa subsp. ja... [more]
LT01_HORVU3.230e-1468.00Low temperature-induced protein lt101.1 OS=Hordeum... [more]
ESI3_LOPEL3.230e-1468.00Salt stress-induced hydrophobic peptide ESI3 OS=Lo... [more]
PMP3_DEBHA6.092e-1366.04Plasma membrane proteolipid 3 OS=Debaryomyces hans... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_H05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_H05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304579 ID=CB304579; Name=CB304579; organism=Citrus sinensis; type=EST; length=571bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGGGGACTTGTAATGATTC
ACAAGGGAATTTACACACTCAATAATACTCCACTTTACATCAACATATTG
AATTAAAATTCATTAAAAAGGACAAATGAAAGAAAAGAAAACGATAAAGA
TTAACAAACGAAACAAGTGCTCTCTCCCACACACACACGCACACCCCAGT
TGATTAAAAATCAAAACCCATCTGGCTACATCAAATCAAAGCTGCCCATC
TAACGGGTGTAAATAAAAGATCTCATAACACATGATGCCCTTGGGATCTC
TCAATAAATGAAGACGAAAGATCACTTCTTGGTGATGGCATAAACAGCAT
AAATAATTCCAGGGATATACCCCAAAATTGTCAAGAGCAAACAGATCCAA
AACTCAGCCTTGCAACCAAATTTGAGAAAGACACCAAGAGGAGGCAAGAT
AACAGCCAAGAAAATATCTACGCATGTTGCTGTGCTTCCATCTGCCATCT
TTGATTGATTCTTAAAAAGTGTAAAATGGAATAAAATAAAATTTAGAGTC
AAAAAACAAAAACTTTGATTA
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