CB304581
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_RHOPT (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplY PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14 Identity = 39/124 (31.45%), Postives = 68/124 (54.84%), Query Frame = -1 Query: 309 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLFRSKDEPVCKIAGGRVFDQKKS 680 +K RV+PR HL D P++V FLR A +++ VPL +G +V PG+++GG N + TV+ PA+ +P +I+ D+S LD+ + D+ + +K D + I +++ K+ Sbjct: 71 KKHRVIPRDYHLDPVRDFPIHVDFLRLGAGATIRVSVPLHLKGLEVAPGVKRGGTFNIVTHTVELEAPAENIPQFIEADVSTLDIGVSLHLSDIALPTGVKSVSRDDVTLVTIVPPSGYNEDKA 194
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_RHOPA (50S ribosomal protein L25 OS=Rhodopseudomonas palustris GN=rplY PE=1 SV=3) HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14 Identity = 39/124 (31.45%), Postives = 68/124 (54.84%), Query Frame = -1 Query: 309 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLFRSKDEPVCKIAGGRVFDQKKS 680 +K RV+PR HL D P++V FLR A +++ VPL +G +V PG+++GG N + TV+ PA+ +P +I+ D+S LD+ + D+ + +K D + I +++ K+ Sbjct: 71 KKHRVIPRDYHLDPVRDFPIHVDFLRLGAGATIRVSVPLHLKGLEVAPGVKRGGTFNIVTHTVELEAPAENIPQFIEADVSTLDIGVSLHLSDIALPTGVKSVSRDDVTLVTIVPPSGYNEDKA 194
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_RHOP2 (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplY PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14 Identity = 40/122 (32.79%), Postives = 66/122 (54.10%), Query Frame = -1 Query: 315 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLFRSKDEPVCKIAGGRVFDQK 680 +K RV+PR HL D P++V FLR A ++I VPL +G + PG+++GG N + TV PAD +P +I+ D+S LD+ + D+ + +K +D + I F+++ Sbjct: 71 QKHRVIPRDYHLDPVKDFPVHVDFLRLGEGATIRISVPLHLKGLESAPGVKRGGTFNIVTHTVDLEAPADAIPQFIEADVSTLDIGVSLHLSDIALPKGVKSVSREDVTLVTIVPPSGFNEE 192
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_RHILO (50S ribosomal protein L25 OS=Rhizobium loti GN=rplY PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14 Identity = 37/116 (31.90%), Postives = 69/116 (59.48%), Query Frame = -1 Query: 336 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALK-LFRSKDEPVCKIAG 680 +K++VLP+ L D P++V FLR + + +DVP+ F +D +PG+++GG LN ++ V+F CPA+ +P +I +DL+ ++ I +++ +K + +D + IAG Sbjct: 72 KKIQVLPKDFQLDPVKDFPVHVDFLRIGKDTEVNVDVPVHFINEDKSPGIKRGGVLNIVRHEVEFHCPANAIPEFITIDLTGTNIGDSIHISAVQLPAGVKPVISDRDFTIATIAG 187
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_RHOPS (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplY PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13 Identity = 38/123 (30.89%), Postives = 67/123 (54.47%), Query Frame = -1 Query: 312 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLFRSKDEPVCKIAGGRVFDQKK 680 +K RV+PR HL D P++V FLR A +++ VPL +G + PG+++GG N + TV PA+ +P +I+ D+S LD+ + D+ + +K +D + I F++++ Sbjct: 71 KKHRVIPRDYHLDPVKDFPIHVDFLRLGAGATIRVSVPLHLKGLESAPGVKRGGTFNIVTHTVDLEAPAESIPQFIEADVSTLDIGVSLHLSDIALPNGVKSVSREDVTLVTIVPPSGFNEEQ 193
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_METSB (50S ribosomal protein L25 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplY PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13 Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = -1 Query: 414 KVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKI 677 K RV+PR L D PL+V FLR P A LK++VP+ F + PG++KGG +N ++ +++ PAD +P I DL EL++ + Sbjct: 72 KQRVIPRDYQLDPIKDLPLHVDFLRLKPGASLKVEVPVHFLNQETCPGVKKGGSVNIVRHSIELRVPADDIPEAITADLGELEINDSL 159
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_MESSB (50S ribosomal protein L25 OS=Mesorhizobium sp. (strain BNC1) GN=rplY PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13 Identity = 33/96 (34.38%), Postives = 59/96 (61.46%), Query Frame = -1 Query: 393 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKV 680 EK++VLP+ L ++V FLR ++ ++VP+ F D+ PG+++GG LN ++ V+F CPA+ +P +I+VDL+ LD+ + +K+ Sbjct: 71 EKIQVLPKDYQLDPVRGFAMHVDFLRVGKNTVVTVNVPVHFINDEKAPGIKRGGVLNIVRHEVEFTCPANAIPDFIEVDLTGLDIGDSVHISAVKL 166
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_RHOPB (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplY PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13 Identity = 35/107 (32.71%), Postives = 62/107 (57.94%), Query Frame = -1 Query: 360 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLFRSKD 680 +K RV+PR HL D P++V FLR AL+++ VPL + + PG+++GG +N + TV+ A+ +P +I+ D+S+LD+ + D+ + +K +D Sbjct: 71 QKHRVIPRDFHLDPVRDFPIHVDFLRLGEGALIRVSVPLHLKNAEGAPGVKRGGTVNIVTHTVELEAEAESIPQFIEADVSQLDIGSSLHLSDVVLPKGVKTLSRED 177
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_NITWN (50S ribosomal protein L25 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplY PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13 Identity = 34/107 (31.78%), Postives = 60/107 (56.07%), Query Frame = -1 Query: 360 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLFRSKD 680 +K RV+PR HL D P++V F+R A +++ VPL DV PG+++GG +N + + C A+ +P +I+ D+ L++ + DL++ P +K +D Sbjct: 71 KKHRVIPRDFHLDPVKDFPIHVDFMRLGEGATIRVSVPLRLLKADVAPGVKRGGTVNLVTHAIDVECAAESIPQFIEADVGALEISHSLHLSDLQLPPGVKPLARED 177
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_OLICO (50S ribosomal protein L25 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplY PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13 Identity = 34/101 (33.66%), Postives = 61/101 (60.40%), Query Frame = -1 Query: 378 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALK 680 +K RV+PR L D PL+V FLR A +++ VPL +G +++PG+++GG +N + TV+ D +P +I+VD+S+L++ + D+ + +K Sbjct: 71 QKYRVIPRDYALDPVKDFPLHVDFLRLGEGATIRVSVPLHVKGAELSPGVKRGGTVNIVNHTVELEAEVDHIPQFIEVDVSKLEINNSVHLNDVALPKGVK 171 The following BLAST results are available for this feature:
BLAST of CB304581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB304581 ID=CB304581; Name=CB304581; organism=Citrus sinensis; type=EST; length=683bpback to top |