CB304595

Overview
NameCB304595
Unique NameCB304595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3294 contig Csv1_Contig3294:733..1416. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304595 vs. ExPASy Swiss-Prot
Match: PELO_RAT (Protein pelota homolog OS=Rattus norvegicus GN=Pelo PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.602e-43
Identity = 86/145 (59.31%), Postives = 114/145 (78.62%), Query Frame = -2
Query:  222 IIENKSRIILVHTSSGYKHSLREVLDAPNVVNMVKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFDITTRQKYVNLVTSVKDSGGTAHIFSFMHVSGEQLGQLTGIAAILRFPLPDLEDIE 656
            ++EN+S+ + VH SSG+K+SL+EVL  P V + + DTKAA EV+AL DF+ ML ++P RA YG K VE A+E +A+ TLLI+D+LFR+ D+ TR +YV LV SVK++ GT  IFS +HVSGEQLGQLTG+AAILRFP+P+L D E
Sbjct:  233 LLENRSKFLQVHASSGHKYSLKEVLCDPTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVERANEALAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLGQLTGVAAILRFPVPELSDQE 377          
BLAST of CB304595 vs. ExPASy Swiss-Prot
Match: PELO_MOUSE (Protein pelota homolog OS=Mus musculus GN=Pelo PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 4.661e-43
Identity = 85/145 (58.62%), Postives = 113/145 (77.93%), Query Frame = -2
Query:  222 IIENKSRIILVHTSSGYKHSLREVLDAPNVVNMVKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFDITTRQKYVNLVTSVKDSGGTAHIFSFMHVSGEQLGQLTGIAAILRFPLPDLEDIE 656
            ++EN+S+ + VH SSG+K+SL+E L  P V + + DTKAA EV+AL DF+ ML ++P RA YG K VE A+E +A+ TLLI+D+LFR+ D+ TR +YV LV SVK++ GT  IFS +HVSGEQLGQLTG+AAILRFP+P+L D E
Sbjct:  233 LLENRSKFLQVHASSGHKYSLKEALCDPTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVERANEALAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLGQLTGVAAILRFPVPELSDQE 377          
BLAST of CB304595 vs. ExPASy Swiss-Prot
Match: PELO_PONAB (Protein pelota homolog OS=Pongo abelii GN=PELO PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.087e-43
Identity = 86/145 (59.31%), Postives = 112/145 (77.24%), Query Frame = -2
Query:  222 IIENKSRIILVHTSSGYKHSLREVLDAPNVVNMVKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFDITTRQKYVNLVTSVKDSGGTAHIFSFMHVSGEQLGQLTGIAAILRFPLPDLEDIE 656
            ++EN+S+ + VH SSG+K+SL+EVL  P V + + DTKAA EV+AL DF+ ML + P RA YG K VE A+E MA+ TLLI+D+LFR+ D+ TR +YV LV SVK++ GT  IFS +HVSGEQL QLTG+AAILRFP+P+L D E
Sbjct:  233 LLENRSKFLQVHASSGHKYSLKEVLCDPTVASRLSDTKAAGEVKALDDFYKMLQHGPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLSQLTGVAAILRFPVPELSDQE 377          
BLAST of CB304595 vs. ExPASy Swiss-Prot
Match: PELO_DROME (Protein pelota OS=Drosophila melanogaster GN=pelo PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.087e-43
Identity = 84/143 (58.74%), Postives = 113/143 (79.02%), Query Frame = -2
Query:  228 IIENKSRIILVHTSSGYKHSLREVLDAPNVVNMVKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFDITTRQKYVNLVTSVKDSGGTAHIFSFMHVSGEQLGQLTGIAAILRFPLPDLED 656
            +++NKS+ +LVH SSG+KHSLRE+L  P V+  + DTKAA EV+AL+ F+ ML  +P +A YG KHV  A E  A++TLLI+D+LFR  D++ R++YVNLV S++D+GG   IFS MH+SGEQL QLTGIAA+LRFP+P+LED
Sbjct:  233 LLDNKSKFMLVHASSGFKHSLREILQDPAVLAKMSDTKAAGEVKALEQFYMMLQCEPAKAFYGKKHVLQAAESQAIETLLISDNLFRCQDVSLRKEYVNLVESIRDAGGEVKIFSSMHISGEQLAQLTGIAALLRFPMPELED 375          
BLAST of CB304595 vs. ExPASy Swiss-Prot
Match: PELO_BOVIN (Protein pelota homolog OS=Bos taurus GN=PELO PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.087e-43
Identity = 86/145 (59.31%), Postives = 112/145 (77.24%), Query Frame = -2
Query:  222 IIENKSRIILVHTSSGYKHSLREVLDAPNVVNMVKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFDITTRQKYVNLVTSVKDSGGTAHIFSFMHVSGEQLGQLTGIAAILRFPLPDLEDIE 656
            ++EN+S+ + VH SSG+K+SL+E L  P V + + DTKAA EV+AL DF+ ML ++P RA YG K VE A+E MA+ TLLI+D+LFR+ D+ TR +YV LV SVK++ GT  IFS +HVSGEQL QLTGIAAILRFP+P+L D E
Sbjct:  233 LLENRSKFLQVHASSGHKYSLKEALCDPTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLSQLTGIAAILRFPVPELSDQE 377          
BLAST of CB304595 vs. ExPASy Swiss-Prot
Match: PELO_HUMAN (Protein pelota homolog OS=Homo sapiens GN=PELO PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.950e-43
Identity = 85/145 (58.62%), Postives = 112/145 (77.24%), Query Frame = -2
Query:  222 IIENKSRIILVHTSSGYKHSLREVLDAPNVVNMVKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFDITTRQKYVNLVTSVKDSGGTAHIFSFMHVSGEQLGQLTGIAAILRFPLPDLEDIE 656
            ++EN+S+ + VH SSG+K+SL+E L  P V + + DTKAA EV+AL DF+ ML ++P RA YG K VE A+E MA+ TLLI+D+LFR+ D+ TR +YV LV SVK++ GT  IFS +HVSGEQL QLTG+AAILRFP+P+L D E
Sbjct:  233 LLENRSKFLQVHASSGHKYSLKEALCDPTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLSQLTGVAAILRFPVPELSDQE 377          
BLAST of CB304595 vs. ExPASy Swiss-Prot
Match: PELO_XENLA (Protein pelota homolog OS=Xenopus laevis GN=pelo PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.771e-42
Identity = 87/151 (57.62%), Postives = 114/151 (75.50%), Query Frame = -2
Query:  222 RRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVVNMVKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFDITTRQKYVNLVTSVKDSGGTAHIFSFMHVSGEQLGQLTGIAAILRFPLPDLEDIE 674
            ++ L+ ++EN+ + + VH+SSG K+SL EVL  P V   + DTKAA E++AL DF+ ML ++P RA YG K VE A+E +AV TLL+TD+LFR+ D+ TR +YV LV SVKD+GGT  IFS +HVSGEQL QLTG+AAILRFP+ DL D E
Sbjct:  227 KQDLKILLENRGKFLQVHSSSGRKYSLTEVLCDPAVTARLSDTKAACEIKALGDFYKMLQHEPDRAFYGIKQVEKANEALAVDTLLVTDELFRHQDVPTRTRYVRLVDSVKDNGGTVRIFSSLHVSGEQLNQLTGVAAILRFPVADLSDEE 377          
BLAST of CB304595 vs. ExPASy Swiss-Prot
Match: PELO_CHICK (Protein pelota homolog OS=Gallus gallus GN=PELO PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.730e-42
Identity = 84/145 (57.93%), Postives = 113/145 (77.93%), Query Frame = -2
Query:  222 IIENKSRIILVHTSSGYKHSLREVLDAPNVVNMVKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFDITTRQKYVNLVTSVKDSGGTAHIFSFMHVSGEQLGQLTGIAAILRFPLPDLEDIE 656
            ++EN+S+ + VH+SSG+K+ L+E L  P V + + DTKAA EV+AL DF+ ML ++P RA YG KHVE A+E MA+ TLLI+D+LFR+ D+ TR +YV LV SV+++ GT  IFS +HVSGEQLGQLTG+AAILRFP+ +L D E
Sbjct:  233 LLENRSKFLQVHSSSGHKYVLKEALCDPAVTSRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKHVEKANEAMAIDTLLISDELFRHQDVATRARYVKLVDSVRENMGTVRIFSSLHVSGEQLGQLTGVAAILRFPVAELSDQE 377          
BLAST of CB304595 vs. ExPASy Swiss-Prot
Match: PELO_DANRE (Protein pelota homolog OS=Danio rerio GN=pelo PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.441e-41
Identity = 83/154 (53.90%), Postives = 115/154 (74.68%), Query Frame = -2
Query:  222 EXERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVVNMVKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFDITTRQKYVNLVTSVKDSGGTAHIFSFMHVSGEQLGQLTGIAAILRFPLPDLEDIE 683
            E  R+  + ++EN+S+ ++VH+SSG+K+SL+EVL  P V   + DTKAA EV+AL+DF+ ML  +P RA YG  HVE A E +A+  LLI+D LFR+ D+ TR +YV LV +VK++GGT  IFS +HVSGEQL QL+G+AAILRFP+ D+ + E
Sbjct:  224 EAVRQDCKLLLENRSKFMVVHSSSGHKYSLKEVLCDPAVTARLSDTKAAGEVKALEDFYKMLQQEPDRAFYGLAHVERASEALAIDILLISDTLFRHQDVATRGRYVRLVDNVKENGGTVRIFSSLHVSGEQLNQLSGVAAILRFPIADVSEPE 377          
BLAST of CB304595 vs. ExPASy Swiss-Prot
Match: YNU6_CAEEL (Uncharacterized protein R74.6 OS=Caenorhabditis elegans GN=R74.6 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.299e-40
Identity = 79/144 (54.86%), Postives = 105/144 (72.92%), Query Frame = -2
Query:  219 ENKSRIILVHTSSGYKHSLREVLDAPNVVNMVKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFDITTRQKYVNLVTSVKDSGGTAHIFSFMHVSGEQLGQLTGIAAILRFPLPDLEDIEM 650
            E +++ +L H+SSG+KH+L+EVL+ P V   + DTKA  EV+AL  F  +++ +P RA YG  HV  A++ +A++TLL+ D LFR  DI TR+KYV LV SV++  G  HIFS MHVSGEQL QLTG AAILRFP+PDL+D  M
Sbjct:  235 EQRAKFMLTHSSSGFKHALKEVLETPQVALRLADTKAQGEVKALNQFLELMSTEPDRAFYGFNHVNRANQELAIETLLVADSLFRAQDIETRRKYVRLVESVREQNGKVHIFSSMHVSGEQLAQLTGCAAILRFPMPDLDDEPM 378          
The following BLAST results are available for this feature:
BLAST of CB304595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PELO_RAT1.602e-4359.31Protein pelota homolog OS=Rattus norvegicus GN=Pel... [more]
PELO_MOUSE4.661e-4358.62Protein pelota homolog OS=Mus musculus GN=Pelo PE=... [more]
PELO_PONAB6.087e-4359.31Protein pelota homolog OS=Pongo abelii GN=PELO PE=... [more]
PELO_DROME6.087e-4358.74Protein pelota OS=Drosophila melanogaster GN=pelo ... [more]
PELO_BOVIN6.087e-4359.31Protein pelota homolog OS=Bos taurus GN=PELO PE=2 ... [more]
PELO_HUMAN7.950e-4358.62Protein pelota homolog OS=Homo sapiens GN=PELO PE=... [more]
PELO_XENLA1.771e-4257.62Protein pelota homolog OS=Xenopus laevis GN=pelo P... [more]
PELO_CHICK6.730e-4257.93Protein pelota homolog OS=Gallus gallus GN=PELO PE... [more]
PELO_DANRE7.441e-4153.90Protein pelota homolog OS=Danio rerio GN=pelo PE=2... [more]
YNU6_CAEEL6.299e-4054.86Uncharacterized protein R74.6 OS=Caenorhabditis el... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_B02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_B02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304595 ID=CB304595; Name=CB304595; organism=Citrus sinensis; type=EST; length=684bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAATTAATGCTTTATTTCA
TTCAATGGGAGATATCAAATACAGCATATATACGTAATCCTGTATAAGTT
AATTACAAATTGCAACTGAAATCACTAAATGATTTATAAAAATGGCTAAT
ATACAAACATGCTAATACCAGCAATGATATATTTAAAATCATTTATGCAT
TTCTTACGCAAACGTTCACATCTCAATGTCTTCTAAATCCGGAAGAGGAA
ATCGAAGGATTGCAGCAATGCCAGTCAATTGTCCTAGTTGTTCTCCTGAG
ACATGCATAAATGAAAATATATGAGCAGTGCCTCCTGAATCCTTAACCGA
GGTGACCAAATTAACATACTTCTGCCTTGTAGTGATATCAAAATTCCTGA
AAAGATCATCTGTGATTAAAAGTGTTTGAACAGCCATTCGCTCATGGGCA
ACTTCCACATGCTTTGGTCCATAACATGCACGTGTAGGATCATTTGTTAG
CATGTTGAAGAAGTCCTTGAGAGCTTGGACCTCTTGTGCTGCTTTGGTGT
CTTTGACCATGTTCACTACATTTGGTGCATCCAATACCTCTCTCAAACTA
TGCTTGTATCCAGAACTTGTATGGACAAGAATTATGCGTGACTTGTTCTC
AATAATTGGTCTCAACTGCCTTCTTTCNNNCTCT
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