CB304606

Overview
NameCB304606
Unique NameCB304606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10252 contig Csv1_Contig10252:57..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304606 vs. ExPASy Swiss-Prot
Match: IMP3_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.663e-49
Identity = 90/166 (54.22%), Postives = 127/166 (76.51%), Query Frame = -1
Query:  145 VNFLEWK-REGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 639
            V+FL W+  +    E  +L+RY +  R++Y +Y+ L   V++L   L+ +  RDPFR+  +  LL+KLY MG++P+R SL LCD +S SSFCRRRL T+L++L+ A+HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVD+SKIKR VLEYN++ DD+D
Sbjct:   16 VDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181          
BLAST of CB304606 vs. ExPASy Swiss-Prot
Match: IMP3_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus GN=IMP3 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.726e-48
Identity = 88/166 (53.01%), Postives = 126/166 (75.90%), Query Frame = -1
Query:  145 VNFLEWK-REGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 639
            V+FL W+  +    E  +L+RY +  R+DY +Y+ L   V++L   L+ +  RDPFR+  +  LL+KLY +G++P+R S  LCD ++ SSFCRRRL T+L++L+ A+HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVD+SKIKR VLEYN++ DD+D
Sbjct:   16 VDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181          
BLAST of CB304606 vs. ExPASy Swiss-Prot
Match: IMP3_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens GN=IMP3 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.945e-48
Identity = 88/166 (53.01%), Postives = 126/166 (75.90%), Query Frame = -1
Query:  145 VNFLEWK-REGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 639
            V+FL W+  +    E  +L+RY +  R+DY +Y+ L   V++L   L+ +  RD FR+  +  LL+KLY +G++P+R SL LCD ++ SSFCRRRL T+L++L+ A+HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVD+SKIKR VLEYN++ DD+D
Sbjct:   16 VDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181          
BLAST of CB304606 vs. ExPASy Swiss-Prot
Match: IMP3_YEAST (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae GN=IMP3 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 83/166 (50.00%), Postives = 126/166 (75.90%), Query Frame = -1
Query:  145 VNFLEWKREGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLA-LCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 639
            V+FLEWK++ GHR+  +++ YH+  R+DY KY+ +CG +++L N L  + P DPFR +   +LL+KLY MGV+ ++  ++ L + ++VS+ CRRRL  I+ RLK AE +++AV +IEQGH+RVGP  + DPA+LVTRNMED++TWVD SKIK+ +L Y +++DD+D
Sbjct:   16 VDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181          
BLAST of CB304606 vs. ExPASy Swiss-Prot
Match: IMP3_SCHPO (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe GN=imp3 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.493e-47
Identity = 81/169 (47.93%), Postives = 130/169 (76.92%), Query Frame = -1
Query:  139 VNFLEWKRE-GGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDH-LSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYDAM 639
            V+FL +K +   HR+ M+++RYH++ R++Y+KY+ +CG  ++L + L  +DP DPFR++  ++LLEKL++MG++PS+  ++  ++  +VS+ CRRRL  I+ +L+ ++ + EA   IEQGH+RVGP  +TDPA+LVTR++EDF+TW DTSKIKR + +YNDK+DDYD +
Sbjct:   15 VDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDYDLL 183          
BLAST of CB304606 vs. ExPASy Swiss-Prot
Match: YS4L_PNECA (Putative 40S ribosomal protein S4-like (Fragment) OS=Pneumocystis carinii GN=RBP PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 72/153 (47.06%), Postives = 107/153 (69.93%), Query Frame = -1
Query:  184 NFLEWKRE-GGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDH-LSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKR 636
            +FL +K++   HR+  +++RYH+  R+DY KY+ L G++  + N L  ++P D F      MLL KL++M ++ S   L+  ++ L+VS+FCRRRL  ++ RLK  E +  +V Y+E GH+RVGPE +TDPAF VTRNMEDF+TWVD+SKI+R
Sbjct:   16 DFLNYKKDDNNHRDVNVIRRYHIPQREDYFKYNQLVGLLLGIANKLSLLEPTDSFGNLHKKMLLGKLFDMALLTSTPKLSDVENKLTVSAFCRRRLPVVMCRLKMCETVSTSVKYVEHGHVRVGPEVITDPAFFVTRNMEDFVTWVDSSKIRR 168          
BLAST of CB304606 vs. ExPASy Swiss-Prot
Match: YS4L_CAEEL (Putative 40S ribosomal protein S4-like OS=Caenorhabditis elegans GN=C48B6.2 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.504e-31
Identity = 60/167 (35.93%), Postives = 107/167 (64.07%), Query Frame = -1
Query:  136 NFLEWKREGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYDAMN 636
            +F+ W+ +   ++  +L++++V  R+ Y  Y++L    +++ +++K +   DPFR + T+ +L K Y  G++P+  +L     ++ +SF RRRL  ++  +   E +K A   +EQGH+R+G + VTDPAF+VTR+ ED ITW   SKIK+ V++YN+  DD+D M+
Sbjct:   17 DFMSWQVDQQGKQGDMLRKFYVKKREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGKVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASKIKKHVMDYNNTRDDFDLMD 183          
The following BLAST results are available for this feature:
BLAST of CB304606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
IMP3_MOUSE2.663e-4954.22U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
IMP3_BOVIN1.726e-4853.01U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
IMP3_HUMAN2.945e-4853.01U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
IMP3_YEAST6.560e-4850.00U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
IMP3_SCHPO2.493e-4747.93U3 small nucleolar ribonucleoprotein protein imp3 ... [more]
YS4L_PNECA4.411e-3647.06Putative 40S ribosomal protein S4-like (Fragment) ... [more]
YS4L_CAEEL2.504e-3135.93Putative 40S ribosomal protein S4-like OS=Caenorha... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304606 ID=CB304606; Name=CB304606; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGCAAGAAGATAACTTTTA
ATTGCCCATATGAACATCCTACAACATGAAATTCAAACAAAAATGTTCAA
AAACAAAAGAAAACACAGATCTTAATGGGTCTTCAGTTCATTGCATCATA
ATCATCCACCTTATCATTGTATTCCAAGACCTTTCTCTTTATCTTGGATG
TGTCTACCCATGTAATAAAGTCTTCCATATTCCTGGTCACGAGGAATGCA
GGGTCTGTAACTGTCTCCGGTCCGACTCGAATGTGTCCCTGTTCAATATA
TGTCACAGCTTCTTTCAGGTGCTCAGCAAACTTCAACCGCACCAAAATGG
TGGCAAGCCTGCGTCTACAGAAGGATGAAACTGATAGATGATCACACAAA
GCCAAGCTTTTCCTGCTTGGTATTACACCCATGTTATATAGCTTCTCGAG
AAGCATATCAGTCATCTCAATACGAAAAGGGTCTCTTGGATCCATCTGCT
TCAATATATTAACCAGCTTCTGCACCATCCCGCACAAACTTGAATACTTC
TTGTAATCGTCGCGGCCGGTGACGTGGTACCGCTGCAATATCATGGCTTC
CCTGTGGCCACCTTCTCTTTTCCATTCTAAAAAATTGACTTTTTTTAACA
ACTTCTTCTCATGGAACTTTAGCTTCCTCATTATGATTCTTTGCTT
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