CB304606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304606 vs. ExPASy Swiss-Prot
Match: IMP3_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 2.663e-49 Identity = 90/166 (54.22%), Postives = 127/166 (76.51%), Query Frame = -1 Query: 145 VNFLEWK-REGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 639 V+FL W+ + E +L+RY + R++Y +Y+ L V++L L+ + RDPFR+ + LL+KLY MG++P+R SL LCD +S SSFCRRRL T+L++L+ A+HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVD+SKIKR VLEYN++ DD+D Sbjct: 16 VDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181
BLAST of CB304606 vs. ExPASy Swiss-Prot
Match: IMP3_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus GN=IMP3 PE=2 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 1.726e-48 Identity = 88/166 (53.01%), Postives = 126/166 (75.90%), Query Frame = -1 Query: 145 VNFLEWK-REGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 639 V+FL W+ + E +L+RY + R+DY +Y+ L V++L L+ + RDPFR+ + LL+KLY +G++P+R S LCD ++ SSFCRRRL T+L++L+ A+HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVD+SKIKR VLEYN++ DD+D Sbjct: 16 VDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181
BLAST of CB304606 vs. ExPASy Swiss-Prot
Match: IMP3_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens GN=IMP3 PE=1 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 2.945e-48 Identity = 88/166 (53.01%), Postives = 126/166 (75.90%), Query Frame = -1 Query: 145 VNFLEWK-REGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 639 V+FL W+ + E +L+RY + R+DY +Y+ L V++L L+ + RD FR+ + LL+KLY +G++P+R SL LCD ++ SSFCRRRL T+L++L+ A+HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVD+SKIKR VLEYN++ DD+D Sbjct: 16 VDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181
BLAST of CB304606 vs. ExPASy Swiss-Prot
Match: IMP3_YEAST (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae GN=IMP3 PE=1 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48 Identity = 83/166 (50.00%), Postives = 126/166 (75.90%), Query Frame = -1 Query: 145 VNFLEWKREGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLA-LCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 639 V+FLEWK++ GHR+ +++ YH+ R+DY KY+ +CG +++L N L + P DPFR + +LL+KLY MGV+ ++ ++ L + ++VS+ CRRRL I+ RLK AE +++AV +IEQGH+RVGP + DPA+LVTRNMED++TWVD SKIK+ +L Y +++DD+D Sbjct: 16 VDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181
BLAST of CB304606 vs. ExPASy Swiss-Prot
Match: IMP3_SCHPO (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe GN=imp3 PE=2 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.493e-47 Identity = 81/169 (47.93%), Postives = 130/169 (76.92%), Query Frame = -1 Query: 139 VNFLEWKRE-GGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDH-LSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYDAM 639 V+FL +K + HR+ M+++RYH++ R++Y+KY+ +CG ++L + L +DP DPFR++ ++LLEKL++MG++PS+ ++ ++ +VS+ CRRRL I+ +L+ ++ + EA IEQGH+RVGP +TDPA+LVTR++EDF+TW DTSKIKR + +YNDK+DDYD + Sbjct: 15 VDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDYDLL 183
BLAST of CB304606 vs. ExPASy Swiss-Prot
Match: YS4L_PNECA (Putative 40S ribosomal protein S4-like (Fragment) OS=Pneumocystis carinii GN=RBP PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36 Identity = 72/153 (47.06%), Postives = 107/153 (69.93%), Query Frame = -1 Query: 184 NFLEWKRE-GGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDH-LSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKR 636 +FL +K++ HR+ +++RYH+ R+DY KY+ L G++ + N L ++P D F MLL KL++M ++ S L+ ++ L+VS+FCRRRL ++ RLK E + +V Y+E GH+RVGPE +TDPAF VTRNMEDF+TWVD+SKI+R Sbjct: 16 DFLNYKKDDNNHRDVNVIRRYHIPQREDYFKYNQLVGLLLGIANKLSLLEPTDSFGNLHKKMLLGKLFDMALLTSTPKLSDVENKLTVSAFCRRRLPVVMCRLKMCETVSTSVKYVEHGHVRVGPEVITDPAFFVTRNMEDFVTWVDSSKIRR 168
BLAST of CB304606 vs. ExPASy Swiss-Prot
Match: YS4L_CAEEL (Putative 40S ribosomal protein S4-like OS=Caenorhabditis elegans GN=C48B6.2 PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.504e-31 Identity = 60/167 (35.93%), Postives = 107/167 (64.07%), Query Frame = -1 Query: 136 NFLEWKREGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYDAMN 636 +F+ W+ + ++ +L++++V R+ Y Y++L +++ +++K + DPFR + T+ +L K Y G++P+ +L ++ +SF RRRL ++ + E +K A +EQGH+R+G + VTDPAF+VTR+ ED ITW SKIK+ V++YN+ DD+D M+ Sbjct: 17 DFMSWQVDQQGKQGDMLRKFYVKKREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGKVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASKIKKHVMDYNNTRDDFDLMD 183 The following BLAST results are available for this feature:
BLAST of CB304606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB304606 ID=CB304606; Name=CB304606; organism=Citrus sinensis; type=EST; length=696bpback to top |