CB304609 | Citrus Genome Database

Overview


Name	CB304609
Unique Name	CB304609
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	606

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CB304609_ssr169	microsatellite	CB304609_ssr169:169..186.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849	contig	Csv1_Contig6849:451..1058.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.584e-31
Identity = 67/103 (65.05%), Postives = 79/103 (76.70%), Query Frame = -1

Query:  262 ERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 570
            +  P+AHVFKAD+PGL+         +D++LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAKVEQVKASMENGVLTVT           KAIEISG
Sbjct:   59 KETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161

[Close]

BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.252e-30
Identity = 67/103 (65.05%), Postives = 80/103 (77.67%), Query Frame = -1

Query:  262 ERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 570
            +  P+AHVFKADLPGL+         +DR+LQISGERS E+E+KND+WHRVERSSGKFLRRFRLP+NAK+++VKASMENGVLTVT           K+IEISG
Sbjct:   56 KETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158

[Close]

BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.789e-30
Identity = 67/103 (65.05%), Postives = 79/103 (76.70%), Query Frame = -1

Query:  262 ERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 570
            +  P+AHVFKADLPGL+         EDR+LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:   52 KETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154

[Close]

BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.642e-30
Identity = 67/103 (65.05%), Postives = 79/103 (76.70%), Query Frame = -1

Query:  262 ERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 570
            +  P+AHVFKADLPGL+         EDR+LQISGER+ E+E+KNDKW RVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:   52 KETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154

[Close]

BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.642e-30
Identity = 67/103 (65.05%), Postives = 79/103 (76.70%), Query Frame = -1

Query:  262 ERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 570
            +  PQAHVFKADLPGL+         E ++LQISGER+KE+EEKNDKWHRVERSSGKFLRRFRLP+NAKV++VKA+M NGV+TVT           KAI+ISG
Sbjct:   55 KETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157

[Close]

BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.757e-30
Identity = 66/103 (64.08%), Postives = 78/103 (75.73%), Query Frame = -1

Query:  262 ERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 570
            +  P+AHVF+AD+PGL+         +DR+LQISGER+ E+E+KND WHRVERSSG F+RRFRLP+NAKVEQVKASMENGVLTVT           KAIEISG
Sbjct:   51 KETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153

[Close]

BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.757e-30
Identity = 67/103 (65.05%), Postives = 77/103 (74.76%), Query Frame = -1

Query:  262 ERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 570
            +  P+AHVFKAD+PGL+         +  ILQISGER+KEQEEK D+WHRVERSSGKFLRRFRLPDNAK EQ+KASMENGVLTVT           K+I+ISG
Sbjct:   59 KETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161

[Close]

BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.114e-30
Identity = 66/103 (64.08%), Postives = 77/103 (74.76%), Query Frame = -1

Query:  262 ERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 570
            +  P+AHVFKAD+PGL+         +DR+LQISGER+ E+E+KND WHRVERSSGKF RRFRLP+NAKV +VKASMENGVLTVT           KAIEISG
Sbjct:   52 KETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154

[Close]

BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.384e-29
Identity = 65/103 (63.11%), Postives = 78/103 (75.73%), Query Frame = -1

Query:  262 ERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 570
            +  P+ HVFK DLPGL+         EDR+LQISGER+ E+E+KNDKWHR+ERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:   52 KETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154

[Close]

BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.808e-29
Identity = 63/103 (61.17%), Postives = 79/103 (76.70%), Query Frame = -1

Query:  262 ERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 570
            +  P+AHVFKADLPG++         +DR+LQISGERS E+E+KND+WHR+ERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT           K I+ISG
Sbjct:   56 KETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158

The following BLAST results are available for this feature:

BLAST of CB304609 vs. ExPASy Swiss-Prot

BLAST of CB304609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53


Match Name	E-value	Identity	Description
HSP16_SOYBN	9.584e-31	65.05	18.5 kDa class I heat shock protein OS=Glycine max...	[more]
HSP11_PEA	1.252e-30	65.05	18.1 kDa class I heat shock protein OS=Pisum sativ...	[more]
HSP12_SOLPE	2.789e-30	65.05	17.6 kDa class I heat shock protein OS=Solanum per...	[more]
HSP11_SOLPE	3.642e-30	65.05	17.7 kDa class I heat shock protein OS=Solanum per...	[more]
HSP11_DAUCA	3.642e-30	65.05	17.8 kDa class I heat shock protein OS=Daucus caro...	[more]
HSP13_SOYBN	4.757e-30	64.08	17.5 kDa class I heat shock protein OS=Glycine max...	[more]
HS17A_ORYSJ	4.757e-30	65.05	17.9 kDa class I heat shock protein OS=Oryza sativ...	[more]
HSP14_SOYBN	8.114e-30	64.08	17.5 kDa class I heat shock protein OS=Glycine max...	[more]
HSP11_SOLLC	1.384e-29	63.11	17.8 kDa class I heat shock protein OS=Solanum lyc...	[more]
HSP12_MEDSA	1.808e-29	61.17	18.2 kDa class I heat shock protein OS=Medicago sa...	[more]

Pages

Properties


Property Name	Value
Genbank description	FLAVEDO0001_IaR_D02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_D02 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304609 ID=CB304609; Name=CB304609; organism=Citrus sinensis; type=EST; length=606bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAAAATATATTTTATTGCA
TCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACTGGCTCC
TGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAACAGGGGG
GAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTTGCTTT
CGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATTTACA
CTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCTC
CTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCCT
TAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAAC
TTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCTTCCTG
CTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGTCCTCTTCAACCT
CAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATACA
TGAGCCTGAGGAGCTCTTTCCAGCAATTCTTGCATTGGCGAATTGGGATG
TTTCCC