CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:486..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPR2_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic OS=Arabidopsis thaliana GN=CLPR2 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.459e-53
Identity = 99/131 (75.57%), Postives = 116/131 (88.55%), Query Frame = -1
Query:  235 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKEDMPRKDAGTGLG 627
            DTM+SLKSPVGTHCVG AY+LAGFLLA GEKG+R AMPLSRIAL SPAGAARGQADDI+NEA EL R+RDY+F EL++ TGQP E++ KDLSR+KRF ++EA+EYGLID+I+RPPRIKED PR+D   GLG
Sbjct:  149 DTMKSLKSPVGTHCVGLAYNLAGFLLAAGEKGHRFAMPLSRIALQSPAGAARGQADDIQNEAKELSRIRDYLFNELAKNTGQPAERVFKDLSRVKRFNAEEAIEYGLIDKIVRPPRIKEDAPRQDESAGLG 279          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP3_ANASP (Probable ATP-dependent Clp protease proteolytic subunit 3 OS=Anabaena sp. (strain PCC 7120) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.407e-24
Identity = 58/112 (51.79%), Postives = 72/112 (64.29%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +KS V T CVG A  +  FLLA G KG R A+P SRI +  P+G  RGQA DI  EA E+LR+R  + +  +  T QP  KI KD+ R     +QEA+EYGLIDR+I
Sbjct:   82 DTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRMALPHSRIMIHQPSGGTRGQATDIEIEAREILRIRHQLNQIYANNTSQPLAKIEKDMDRDFFMSAQEAMEYGLIDRVI 193          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_ANAVT (ATP-dependent Clp protease proteolytic subunit 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.055e-23
Identity = 58/112 (51.79%), Postives = 71/112 (63.39%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +KS V T CVG A  +  FLLA G KG R A+P SRI +  P+G  RGQA DI  EA E+LR+R  + +  +  T QP  KI KD+ R     +QEA EYGLIDR+I
Sbjct:   82 DTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGTRGQATDIEIEAREILRIRHQLNQIYANNTNQPLAKIEKDMDRDFFMSAQEAKEYGLIDRVI 193          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP1_PROMT (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain NATL2A) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.055e-23
Identity = 55/111 (49.55%), Postives = 72/111 (64.86%), Query Frame = -1
Query:  295 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 627
            DTMQ +K  + T CVG A  +  FLL  G KG RS++  SRI +  P G ARGQA DIR +ADE+L ++D + KELS +TGQP E+I +D  R       EA+EYG+ID +
Sbjct:   77 DTMQHVKPDIHTVCVGLAASMGAFLLCAGAKGKRSSLLHSRIMIHQPLGGARGQASDIRIQADEILFIKDKLNKELSDRTGQPIERIREDTDRDFYMSPSEAIEYGIIDNV 187          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_PELTS (ATP-dependent Clp protease proteolytic subunit OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=clpP PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.505e-23
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = -1
Query:  295 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 627
            DTMQ ++SPV T C+G A  +A  LLA G KG R ++P +RI +  P G  +GQA DI   A E+LR+R ++ + LSR TGQP EKI +D  R     +QEA EYG+ID +
Sbjct:   79 DTMQYVRSPVATICIGQAASMASLLLAAGAKGKRYSLPYARILIHQPLGGVQGQATDIEIHAKEILRMRQFLNEILSRHTGQPIEKIARDTERDYFMSAQEAKEYGIIDEV 189          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_THEEB (ATP-dependent Clp protease proteolytic subunit 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.505e-23
Identity = 58/112 (51.79%), Postives = 72/112 (64.29%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +KS V T CVG A  +  FLLA G KG R A+P SRI +  P+G  RGQA DI  EA E+LRVR  + +  +  TGQP EKI +D+ R     ++EA  YGLIDR+I
Sbjct:   82 DTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGTRGQATDIEIEAREILRVRRQLNELYAYHTGQPLEKIERDMDRDFFMSAEEAKNYGLIDRVI 193          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_RALME (ATP-dependent Clp protease proteolytic subunit OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=clpP PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.332e-22
Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLA G KG RSA+P SRI +  P G ARGQA DI  +A E+L +R+ +   LS  TGQP EKI +D  R       +A++YGLID++I
Sbjct:  101 DTMQFIKPDVQTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMIHQPLGGARGQASDIEIQAREILYLRERLNSILSEVTGQPVEKIARDTDRDNFMSGDQAVDYGLIDKVI 212          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_CLOCE (ATP-dependent Clp protease proteolytic subunit OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=clpP PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.332e-22
Identity = 56/112 (50.00%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLA GEKG R A+P S I +  P G ARGQA DI+  A+ +LR RD + K LS +TGQP +KI KD  R     + EA  YG+ID I+
Sbjct:   79 DTMQYVKCDVSTICMGMAASMGAFLLAAGEKGKRFALPNSEIMIHQPLGGARGQATDIKIHAENILRTRDKLNKILSERTGQPLDKIEKDTERDFFMSADEAKAYGIIDDIM 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNPX (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain WH8102) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.332e-22
Identity = 55/112 (49.11%), Postives = 73/112 (65.18%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T CVG A  +  FLL  G KG RS++  SRI +  P G ARGQA DIR +ADE+L +++ + +ELS +TGQP ++I +D  R       EA+EYGLID +I
Sbjct:   77 DTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILYLKERLNQELSDRTGQPLDRIQQDTDRDFFMSPGEAVEYGLIDSVI 188          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_RALEJ (ATP-dependent Clp protease proteolytic subunit OS=Ralstonia eutropha (strain JMP134) GN=clpP PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.739e-22
Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLA G KG RSA+P SRI +  P G ARGQA DI  +A E+L +R+ +   LS  TGQP EKI +D  R       +A++YGLID++I
Sbjct:  101 DTMQFVKPDVQTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMIHQPLGGARGQASDIEIQAREILYLRERLNSILSEVTGQPVEKIARDTDRDNFMSGDQAVDYGLIDKVI 212          
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPR2_ARATH1.459e-5375.57ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPP3_ANASP5.407e-2451.79Probable ATP-dependent Clp protease proteolytic su... [more]
CLPP2_ANAVT2.055e-2351.79ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_PROMT2.055e-2349.55ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_PELTS3.505e-2348.65ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_THEEB3.505e-2351.79ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_RALME1.332e-2249.11ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOCE1.332e-2250.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNPX1.332e-2249.11ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_RALEJ1.739e-2249.11ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
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