CB304628

Overview
NameCB304628
Unique NameCB304628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2135 contig Csv1_Contig2135:90..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.733e-34
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = -3
Query:  440 VEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 679
            VE+RCFVGGLAWAT D SL +AFS +GDI +SKIINDRETGRSRGFGFV F+DEKSMRDAIEGMNGQ LDGRNITVNEAQ
Sbjct:    4 VEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.647e-32
Identity = 65/80 (81.25%), Postives = 74/80 (92.50%), Query Frame = -3
Query:  440 VEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 679
            VE+RCFVGGLAWAT D +L  AFS YG++L+SKIINDRETGRSRGFGFV F+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    6 VEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.792e-32
Identity = 63/80 (78.75%), Postives = 74/80 (92.50%), Query Frame = -3
Query:  440 VEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 679
            VE+RCFVGGLAWAT D +L  AF+ YGD+++SKIINDRETGRSRGFGFV F+DEK+M+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    6 VEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.821e-31
Identity = 63/80 (78.75%), Postives = 74/80 (92.50%), Query Frame = -3
Query:  440 VEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 679
            VE+RCFVGGLAWAT + SL  AFS +G++++SKIINDRETGRSRGFGFV F+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    6 VEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.305e-29
Identity = 60/80 (75.00%), Postives = 69/80 (86.25%), Query Frame = -3
Query:  440 VEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 679
            VE+RCFVGGLAWAT D  L   FS +GD+++SKIINDRE+GRSRGFGFV F+DEK+MRDAIE MNG+ LDGR ITVNEAQ
Sbjct:    4 VEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.704e-29
Identity = 59/80 (73.75%), Postives = 70/80 (87.50%), Query Frame = -3
Query:  440 VEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 679
            VE+RCFVGGLAWAT D+ L   FS +G++++SKIINDRETGRSRGFGFV F+DEKSM+DAI+ MNG+ LDGR ITVNEAQ
Sbjct:    4 VEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.226e-29
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = -3
Query:  440 VEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 679
            VE+RCFVGGL WAT D SL  AFS YGD+++SKII DRETGRSRGFGFV F  +++MR AIE MNGQ+LDGRNITVNEAQ
Sbjct:    4 VEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.458e-29
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = -3
Query:  440 VEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 679
            VE+RCFVGGLAWAT++ SL  AF++YG+IL+SK+I DRETGRSRGFGFV F  E SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:    6 VEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.721e-27
Identity = 55/80 (68.75%), Postives = 68/80 (85.00%), Query Frame = -3
Query:  440 VEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 679
            VE+RCFVGGLAWAT + +L +AF+ +G +++SK+I DRETGRSRGFGFV F  E+SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:    6 VEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CB304628 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.491e-21
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = -3
Query:  440 SSLHEAFSAYGDILESKIINDRETGRSRGFGFVIFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 631
            +SLH AFS YG++LESKII DRET RSRGFGFV F  E++MR AIEGMNG+ LDGRNITVNEAQ
Sbjct:    1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64          
The following BLAST results are available for this feature:
BLAST of CB304628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
GRP1_DAUCA8.733e-3485.00Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP1_SINAL1.647e-3281.25Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP7_ARATH4.792e-3278.75Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP2_SINAL1.821e-3178.75Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP8_ARATH1.305e-2975.00Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP10_BRANA1.704e-2973.75Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP_HORVU2.226e-2975.00Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRPA_MAIZE8.458e-2973.75Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP2_SORBI2.721e-2768.75Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP1_SORBI6.491e-2176.56Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304628 ID=CB304628; Name=CB304628; organism=Citrus sinensis; type=EST; length=681bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGTAATTCATTTCATTTT
TTTTTTCAAACAATTAACCAAACAGGGAGAACGAAACAACACAGGATAAC
AGGAACCGATCAAAACGACACATCATAACCCAAGGAAAATATCAAAACAC
GGAACGGTAACATTCAACTCCTAATTTATCCTACAAAACCCTAGTTCCTC
CAGCTACCGCCATCAAAAGCACCGCTCCTTGAGTATCGGGAACCACCATC
ACCGCCATATCCACCGTCACGGCTGTAACCACCTTCACGGCGGCCACCAT
ATCCACCGCCGCCACCTCCGTATCCGCGGCTCCCACCGTATCCACCGCCA
CCACCACTTTCACGGCGTCCACCACCTCCATATCCACCACCGCCACGGCT
TCCGTAACCGCCACCGCCACCGCCACCGCTTCCACGGGACTGGGCCTCGT
TGACTGTTATGTTACGGCCGTCCAGATTCTGGCCGTTCATGCCTTCGATT
GCGTCCCTCATCGACTTCTCATCGCGGAAGATAACGAATCCAAATCCTCT
GGATCTTCCAGTCTCGCGATCGTTAATAATCTTCGATTCAAGGATATCGC
CGTAAGCACTGAAGGCCTCATGGAGGGAGCTGTCAGTGGTGGCCCAGGCC
AGGCCGCCTACGAAGCACCGAAACTCGACAT
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