CB304663

Overview
NameCB304663
Unique NameCB304663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10531 contig Csv1_Contig10531:418..997. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304663 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.396e-27
Identity = 56/99 (56.57%), Postives = 73/99 (73.74%), Query Frame = -2
Query:  277 ASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ 573
            A++KAQ  V EA+TGGP+AA +YAA E K  ++TNSVK W KLN Y   H M D A+P AA +S +YN LV +MT  GY++ GYLPLVP+DDI KA+++
Sbjct:  110 ATEKAQSFVKEARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAYEK 208          
BLAST of CB304663 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.000e-11
Identity = 44/101 (43.56%), Postives = 58/101 (57.43%), Query Frame = -2
Query:  277 ETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ 579
            ETAS  A+ +  + +   P A   YA  E K      +V AW KLN   LF  +A +AVPTAA  S+KYN  VV+  +KGY V  Y+PLVP + I+K F +
Sbjct:  137 ETASGMAKSVYSKYE---PAAKELYANYEPKAEQC--AVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAE 232          
BLAST of CB304663 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.820e-11
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = -2
Query:  280 SVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFK 468
            +V AW  LN   LF  +A + VPTAA WS+KYN  V    ++GYTV  YLPL+P + IAK F+
Sbjct:  167 AVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQ 229          
The following BLAST results are available for this feature:
BLAST of CB304663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y1736_ARATH3.396e-2756.57REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
Y3550_ARATH2.000e-1143.56REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_VITRI5.820e-1150.79Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_B05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_B05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304663 ID=CB304663; Name=CB304663; organism=Citrus sinensis; type=EST; length=580bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGAATTTATGAACCATTTA
TCTCCATTCACATATGGGGAAAACCAAGTCTTAAAGGTCATTTACAGATT
ACAAACCATAGTGCCGCCACCCGGCCACACCTTCAAGCCTAGAATTTTGA
AAACCAGACCACTAGATGAAGCAAACTCATCAGACAAAAAGTAAATTCTT
AGTCAGAATCTGAGCTTGAATCCTTCTCCTTTGCATCTTCTTTCTCTGGA
GCATCTTCTTTCTTGGGAGCTTCACTCTGCTTAAAAGCTTTGGCTATGTC
ATCAATGGGAACCAAAGGAAGATAGCCAAAGACTGTGTAACCCTTCTTCG
TCATCTCCACGACAAGATGGTTATACTTCTTGGACCACTGTGCAGCTGTG
GGAACAGCCATATCTGCCATTGTGTGGAACAATGCATAGTGGTTTAGTTT
ATACCATGCTTTCACGGAATTTGTTAGCAGAAGGTGTTTAGACTCAGCAG
CAGCATAATGGACAGCTGCTCGAGGCCCCCCGGTTTGGGCCTCAATCACA
AGCTTTTGAGCTTTCTGTGATGCTGTTTCA
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