CB304672

Overview
NameCB304672
Unique NameCB304672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:870..1388. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304672 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.041e-55
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = -2
Query:  188 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGAHPELILAAADSAETAD 520
            GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGG HPELILAAADSAETAD
Sbjct:  245 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355          
BLAST of CB304672 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.247e-50
Identity = 100/111 (90.09%), Postives = 105/111 (94.59%), Query Frame = -2
Query:  188 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGAHPELILAAADSAETAD 520
            GATGVK L+SIGMI+ VPGMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG HPELILAAADSAE AD
Sbjct:  241 GATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELILAAADSAEIAD 351          
BLAST of CB304672 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 2.747e-48
Identity = 97/111 (87.39%), Postives = 102/111 (91.89%), Query Frame = -2
Query:  188 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGAHPELILAAADSAETAD 520
            GATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG   PEL+LAAADSAET D
Sbjct:  238 GATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVLAAADSAETVD 348          
BLAST of CB304672 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 7.245e-41
Identity = 85/105 (80.95%), Postives = 92/105 (87.62%), Query Frame = -2
Query:  206 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGAHPELILAAAD 520
            GATGVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT       EL++A  D
Sbjct:  244 GATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMIAYKD 348          
BLAST of CB304672 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.133e-40
Identity = 87/113 (76.99%), Postives = 94/113 (83.19%), Query Frame = -2
Query:  188 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTY--VGGAHPELILAAADSAETAD 520
            GATGVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT   V  A  E  + A+   E  D
Sbjct:  241 GATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTIPEVSPALREEFVIASKDDEVVD 353          
BLAST of CB304672 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.162e-22
Identity = 54/79 (68.35%), Postives = 66/79 (83.54%), Query Frame = -2
Query:  284 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 520
            GA  VKRL S+G IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  235 GAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
BLAST of CB304672 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.678e-21
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = -2
Query:  284 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 520
            GA  VKRL S+  IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  231 GAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of CB304672 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.420e-20
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = -2
Query:  284 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 520
            GA   KRL S+G ++++ GM+ LDMNSAEDAIV+ TREV  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  238 GAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          
BLAST of CB304672 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.133e-20
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = -2
Query:  242 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 520
            GA  VKR+ S G+ E +  M+ LDM  AED I   TRE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  243 GAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
BLAST of CB304672 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 3.499e-19
Identity = 51/92 (55.43%), Postives = 62/92 (67.39%), Query Frame = -2
Query:  245 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYV 520
            GA  VKRL S  ++  +  M+ LDMN AED IV+ TREV PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:  237 GAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
The following BLAST results are available for this feature:
BLAST of CB304672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
THI4_CITSI1.041e-5599.10Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL2.247e-5090.09Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH2.747e-4887.39Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE7.245e-4180.95Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE6.133e-4076.99Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH1.162e-2268.35Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX1.678e-2167.09Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR1.420e-2063.29Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_UROFA4.133e-2052.69Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI2_SCHPO3.499e-1955.43Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304672 ID=CB304672; Name=CB304672; organism=Citrus sinensis; type=EST; length=521bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAACAAACACTTTATTC
ACAAAACCTCACAACATCATCTCATTATTCGCATCAACCATCCATCACAA
CCACCTAAATACAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAG
CTGATGAGTGATGATGCCTGTTATTATCAAATTAACCATCAGCAGTCTCA
GCAGAATCAGCTGCAGCTAAGATCAGCTCAGGGTGAGCACCTCCCACATA
TGTACCGTCTAATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCG
CAGCCTTCTGCCCCGATATCATCATTGCTCCAAATGTTGGCCCCATTCTA
GGAGCACCATCAATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGG
CACAACCTCCCTGGTCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGT
CCAGTGCCTTCATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAAC
CTCTTTACTCCAGTGGCCCCC
back to top