CB304675

Overview
NameCB304675
Unique NameCB304675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9921 contig Csv1_Contig9921:254..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 2.388e-49
Identity = 94/100 (94.00%), Postives = 98/100 (98.00%), Query Frame = -1
Query:  279 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 578
            VGIDIFNGKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVV+VMS+MGEE+IC+LKDIGPKN
Sbjct:   61 VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 8.492e-47
Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = -1
Query:  282 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 578
            V IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+NLL+QIKDGFAEGKDLVV+VMS+MGEEQICALKDIGPK
Sbjct:   61 VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 9.389e-46
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = -1
Query:  282 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 578
            V IDIFNGKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDL+LPTD+ LL+QIKDGF EGKDLVV+VMS+MGEEQICALKDIGPK
Sbjct:   61 VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.732e-45
Identity = 86/99 (86.87%), Postives = 95/99 (95.96%), Query Frame = -1
Query:  282 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 578
            V IDIFNGKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLT+ G+TKDDL+LPTD++LL+QIKDGFA+GKDLVV+VMS+MGEEQICALKDIGPK
Sbjct:   61 VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.660e-45
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = -1
Query:  279 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 578
            V IDIFNGKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDENLL Q+KDGF EGKDLVV+VMS+MGEEQI A+KD+G KN
Sbjct:   61 VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDENLLKQVKDGFQEGKDLVVSVMSAMGEEQINAVKDVGTKN 160          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.086e-45
Identity = 85/99 (85.86%), Postives = 92/99 (92.93%), Query Frame = -1
Query:  282 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 578
            V IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+ LL+Q+KDGFAEGKDLV++VMS+MGEEQIC +KDIGPK
Sbjct:   61 VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.086e-45
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = -1
Query:  282 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 578
            V IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLT+ GNTKDDLRLPTDENLLS IKDGFAEGKDLVV+VMS+MGEEQI ALKDIGPK
Sbjct:   61 VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.086e-45
Identity = 85/99 (85.86%), Postives = 92/99 (92.93%), Query Frame = -1
Query:  282 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 578
            V IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+ LL+Q+KDGFAEGKDLV++VMS+MGEEQIC +KDIGPK
Sbjct:   61 VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.948e-45
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = -1
Query:  282 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 578
            V IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLT+ GNTKDDLRLPTD++LLSQIKDGFAEGKDLVV+VMS+MGEEQI ALKDIGPK
Sbjct:   61 VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
BLAST of CB304675 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.948e-45
Identity = 85/99 (85.86%), Postives = 92/99 (92.93%), Query Frame = -1
Query:  282 VGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 578
            V IDIF GKKLEDIVPSSHNCD PHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD+NLL+ IKDGFAEGKDLV++VMS+MGEEQIC +KD+GPK
Sbjct:   61 VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
The following BLAST results are available for this feature:
BLAST of CB304675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF5A_MANES2.388e-4994.00Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A2_NICPL8.492e-4790.91Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A_SENVE9.389e-4688.89Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A2_MEDSA2.732e-4586.87Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A2_SOLLC4.660e-4587.00Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A5_SOLTU6.086e-4585.86Eukaryotic translation initiation factor 5A-5 OS=S... [more]
IF5A3_SOLLC6.086e-4589.90Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A1_SOLLC6.086e-4585.86Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A4_SOLTU7.948e-4588.89Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A1_TOBAC7.948e-4585.86Eukaryotic translation initiation factor 5A-1 OS=N... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_C08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_C08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304675 ID=CB304675; Name=CB304675; organism=Citrus sinensis; type=EST; length=578bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGATAAAATAGTAAAATATAT
ATAAGTCCGAGATGCTGTCAACATAAATTTCGTTCAACAGGAGATTGACG
ACACCTGCTTTCTTTCCACTTCCCTTATCACAAGCACGACGATATTTTAA
TACACAGCCAAAATACTATCTTAATGGAAGTTTGTTGTGGACATGGATGG
TAGATAGTCTCCATGTTGGCAACATAAGAAAGAGTTCTCCTGCTATCAGC
CAAAGCTAATGCCATGGGATTATAGTTAATTCTTAGGACCAATGTCCTTA
AGGGCACAGATCTGCTCCTCTCCCATTGACGACATAACGGTCACCACAAG
GTCTTTTCCTTCAGCAAACCCATCTTTAATCTGGCTAAGCAGATTTTCAT
CGGTAGGAAGCCTCAGATCATCCTTGGTGTTTCCGGTTTCAGTTAAAAGG
CTCACAAAACCATCTTCGGATATATCAATCAGCTGATAGTCAGTGCGAGT
AACATGGGGAGCATCACAATTGTGGGAGGAAGGCACAATATCTTCAAGCT
TCTTTCCATTAAATATATCAATTCCCAC
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