CB304699

Overview
NameCB304699
Unique NameCB304699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6094 contig Csv1_Contig6094:95..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304699 vs. ExPASy Swiss-Prot
Match: PH1_ARATH (Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.258e-51
Identity = 95/124 (76.61%), Postives = 108/124 (87.10%), Query Frame = -3
Query:  231 EFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKEFTVT--RASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEIVDYDSKR 596
            EFWSNPERSGWLTKQG+YIKTWRRRWFVLK+GKL WFK+      R S PRGVI V  CLTVKGAEDV+NK +AFELS+ + TM+FIAD+EKEKE+WINSIGRSIVQHSRSVTDSE++DYD +R
Sbjct:   22 EFWSNPERSGWLTKQGDYIKTWRRRWFVLKRGKLLWFKDQAAAGIRGSTPRGVISVGDCLTVKGAEDVVNKPFAFELSSGSYTMFFIADNEKEKEEWINSIGRSIVQHSRSVTDSEVLDYDHRR 145          
BLAST of CB304699 vs. ExPASy Swiss-Prot
Match: Y4775_DICDI (PH domain-containing protein DDB_G0274775 OS=Dictyostelium discoideum GN=DDB_G0274775 PE=4 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.776e-13
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = -3
Query:  288 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKEFTVTRASKPRGVIPVASCLTVKGAEDV-LNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSI 578
            +R GWLTKQG  I+TWRRRWFVLK  KLF+FK      A+   G+I +     VK  +D    K+Y F + T     Y  A++E + + W+ SI R++
Sbjct:   17 DREGWLTKQGGSIRTWRRRWFVLKGKKLFYFKSKGDIEAT---GLIELEQNSFVKEEKDKDKKKKYMFTVGTSKRVFYIFAETETDMKQWMESIKRNL 111          
BLAST of CB304699 vs. ExPASy Swiss-Prot
Match: CYH3_MOUSE (Cytohesin-3 OS=Mus musculus GN=Cyth3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 47/126 (37.30%), Postives = 69/126 (54.76%), Query Frame = -3
Query:  288 TEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKEFTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTE----------TMYFI-ADSEKEKEDWINSIGRSI 599
            T  + NP+R GWL K G  +KTW+RRWF+L    L++F E+T  +  +PRG+IP+ + L+++  ED   K   FEL           + +TE           +Y I A S +EKE+W+ SI  SI
Sbjct:  259 THTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYF-EYTTDK--EPRGIIPLEN-LSIREVEDP-RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI 379          
The following BLAST results are available for this feature:
BLAST of CB304699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PH1_ARATH1.258e-5176.61Pleckstrin homology domain-containing protein 1 OS... [more]
Y4775_DICDI1.776e-1341.84PH domain-containing protein DDB_G0274775 OS=Dicty... [more]
CYH3_MOUSE2.836e-1137.30Cytohesin-3 OS=Mus musculus GN=Cyth3 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304699 ID=CB304699; Name=CB304699; organism=Citrus sinensis; type=EST; length=604bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAACCAAAAATTGATTTC
AATTTATAAGCATTTTCATGGGGCAAAGTAAGCATCAGAACGTACACCGC
GGAAGCCCTAACAAACTAATACACACTAATTTAAGCATCACAATATACAA
AGCAAACAAGGAATTATTCACCACACGTTGCCACGTGGCACAAATGATTC
AAACCTGTAGTTTATCATCAATCGTCATCACCGCTTGCTATCGTAATCAA
CGATCTCGGAATCAGTAACCGACCTGGAGTGCTGCACTATGGAGCGTCCG
ATGGAGTTGATCCAGTCCTCTTTCTCCTTCTCGGAATCAGCGATGAAGTA
CATCGTCTCAGTCCTCGTACTCAGCTCAAAAGCGTACTGTTTATTCAACA
CATCTTCGGCTCCCTTGACGGTGAGGCAGGAGGCCACTGGAATAACGCCA
CGTGGCTTGGAGGCGCGGGTGACAGTAAATTCTTTGAACCAAAAGAGCTT
GCCTTGTTTTAAAACGAACCAACGGCGACGCCAAGTTTTTATGTACTCGC
CTTGTTTGGTCAACCAGCCGGACCGTTCGGGGTTTGACCAGAACTCAGTG
CTGT
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