CB304705

Overview
NameCB304705
Unique NameCB304705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 5.855e-42
Identity = 79/110 (71.82%), Postives = 93/110 (84.55%), Query Frame = -3
Query:  212 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 541
            AEEGQVI CHTVE+WNEQLQKG   K LIVVDFTASWC PC+ ++P L+ELAKKLP V FLKVDVDELK+VA EWAVE+MPTF+  KEGK+++++VGAKK ELQ  + KH
Sbjct:    3 AEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKH 112          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 8.455e-41
Identity = 78/111 (70.27%), Postives = 92/111 (82.88%), Query Frame = -3
Query:  212 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 544
            MAEEGQVI  HTV++WNE LQKGI  KKLIVVDFTASWC PCK ++   +ELAKK+P V FLKVDVDELKSVA +WAVEAMPTF+  KEGK+++++VGAKK ELQ  + KH
Sbjct:    1 MAEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKH 111          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.884e-40
Identity = 73/110 (66.36%), Postives = 93/110 (84.55%), Query Frame = -3
Query:  212 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 541
            +EEGQVI+CHTVE+WNEQLQK   +K L+VVDFTASWC PC+ ++P  ++LAKKLP V+FLKVD DELKSVA +WA++AMPTF+  KEGK+L+++VGAKK ELQ  + KH
Sbjct:    3 SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.083e-39
Identity = 72/110 (65.45%), Postives = 91/110 (82.73%), Query Frame = -3
Query:  212 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 541
            +EEGQV  CH VE WNE  +KG+  KKL+VVDFTASWC PC+ ++PIL+++AKK+P VIFLKVDVDELK+V+ EW+VEAMPTFV  K+GK ++R+VGAKK ELQ  + KH
Sbjct:    9 SEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKH 118          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.383e-35
Identity = 70/111 (63.06%), Postives = 88/111 (79.28%), Query Frame = -3
Query:  212 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 544
            MAEE QVI+CHTV+ WNE+ QK   + KLIV+DFTASWC PC++++P +SELAKK P V F KVDVD+LK VAEE+ VEAMP+FV+ KEG+ +ERIVGA+K EL   +  H
Sbjct:    1 MAEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.183e-34
Identity = 63/111 (56.76%), Postives = 89/111 (80.18%), Query Frame = -3
Query:  212 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 544
            MA EG+VI+CHT+E WNE+++    +KKLIV+DFTASWCPPC+ ++P+ +E+AKK   V+F K+DVDEL++VA+E+ VEAMPTFV  KEG +++R+VGA K E+   + KH
Sbjct:    1 MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.307e-33
Identity = 64/111 (57.66%), Postives = 87/111 (78.38%), Query Frame = -3
Query:  212 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 544
            MA EG+VI+CHTVE W E+L+    +KKLIV+DFTA+WCPPC+ ++P+ ++LAKK   V+F KVDVDEL +VAEE+ V+AMPTF+  KEG++ E +VGA K E+   +EKH
Sbjct:    1 MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKH 111          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 4.968e-33
Identity = 66/111 (59.46%), Postives = 87/111 (78.38%), Query Frame = -3
Query:  212 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 541
            AEEGQVI CHT + W  QL K   + KLIV+DFTASWCPPC++++PI ++LAKK + + IF KVDVDEL+SVA+E+ VEAMPTFV  K G+V++++VGA K +LQ  + KH
Sbjct:    3 AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKH 113          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 6.489e-33
Identity = 64/107 (59.81%), Postives = 85/107 (79.44%), Query Frame = -3
Query:  212 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 532
            G+VIS H++E W  Q+++  AAKKL+V+DFTASWC PC++M+PI ++LAKK PA +FLKVDVDELK +AE+++VEAMPTF+  KEG V +R+VGA K EL   V  H
Sbjct:   18 GEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLH 124          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.888e-32
Identity = 62/111 (55.86%), Postives = 87/111 (78.38%), Query Frame = -3
Query:  212 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 541
            AEEGQVI CH ++ W  QL     + KLIV+DFTASWCPPC++++P+ ++LAKK + + IF KVDVDEL++VA+E+ VEAMPTFVL K+G V++++VGA+K +L   + KH
Sbjct:    3 AEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKH 113          
The following BLAST results are available for this feature:
BLAST of CB304705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
TRXH_RICCO5.855e-4271.82Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH2_TOBAC8.455e-4170.27Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_ARATH1.884e-4066.36Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH1_TOBAC2.083e-3965.45Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_FAGES2.383e-3563.06Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH5_ARATH1.183e-3456.76Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH3_ARATH1.307e-3357.66Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH4_ARATH4.968e-3359.46Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT6.489e-3359.81Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH2_BRANA1.888e-3255.86Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_F12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_F12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304705 ID=CB304705; Name=CB304705; organism=Citrus sinensis; type=EST; length=558bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGACGCCAAAGACGGTGTG
CTAGAAGATTGTCATTTATTCGTATATACAGGCCTGTTAAACATGGTACC
ATATTCTTACATTAAGCAACCACAAACACACACCTTACAATAAAAGACCA
ATGAGATTCATGTACGCATCAATCAAGCATTAGCAGTAGTTGCATTCTCA
ACAGTTGTTGCGTGCTTTTCGACAGCCAGCTGCAGCTCACCTTTCTTCGC
TCCCACAATCCTCTCCAGGACTTTGCCTTCTTTCGTCAGTACAAAGGTCG
GCATGGCTTCCACAGCCCATTCCTCAGCGACGGACTTCAATTCATCAACA
TCCACCTTCAAGAATATGACAGCGGGCAGCTTCTTCGCCAATTCACTCAA
AATTGGAGACATCAACTTGCATGGCGGGCACCATGAAGCCGTAAAATCCA
CCACTATCAGTTTCTTTGCCGCAATGCCCTTTTGGAGCTGCTCGTTCCAG
GATTCAACAGTGTGGCAGCTGATCACTTGTCCCTCCTCGGCCATCTTAAT
TATGATCA
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