CB304713

Overview
NameCB304713
Unique NameCB304713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304713_ssr169 microsatellite CB304713_ssr169:169..186. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:530..1058. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.300e-24
Identity = 59/89 (66.29%), Postives = 66/89 (74.16%), Query Frame = -3
Query:  262 GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 528
            GL+         +G ILQISGER+KEQEEK D+WHRVERSSGKFLRRFRLPDNAK EQ+KASMENGVLTVT           K+I+ISG
Sbjct:   73 GLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.895e-24
Identity = 58/89 (65.17%), Postives = 66/89 (74.16%), Query Frame = -3
Query:  262 GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 528
            GL+         +G ILQISGERS+EQEEK+DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+ISG
Sbjct:   71 GLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.939e-24
Identity = 57/89 (64.04%), Postives = 68/89 (76.40%), Query Frame = -3
Query:  262 GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 528
            GL+         EG++LQISGER+KE+EEKNDKWHRVERSSGKFLRRFRLP+NAKV++VKA+M NGV+TVT           KAI+ISG
Sbjct:   69 GLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.450e-24
Identity = 56/89 (62.92%), Postives = 65/89 (73.03%), Query Frame = -3
Query:  262 GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 528
            GL+         +G +LQISGERSKEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+++G
Sbjct:   73 GLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 8.425e-24
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = -3
Query:  262 GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 528
            GLR         +G ILQISGERS E EEKNDKWHRVERSSGKF RRFRLP+NAK+E++KASMENGVL+VT           K+I+ISG
Sbjct:   69 GLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.425e-24
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = -3
Query:  262 GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 489
            G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKASMENGVLTVT           KAIEISG
Sbjct:   74 GNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.437e-23
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = -3
Query:  262 GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 528
            GL+         + ++LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAKVEQVKASMENGVLTVT           KAIEISG
Sbjct:   73 GLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.451e-23
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = -3
Query:  262 GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 528
            GL+         + R+LQISGER+ E+E+KND WHRVERSSG F+RRFRLP+NAKVEQVKASMENGVLTVT           KAIEISG
Sbjct:   65 GLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.451e-23
Identity = 56/89 (62.92%), Postives = 64/89 (71.91%), Query Frame = -3
Query:  262 GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 528
            GL+         +G +LQISGER KEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+I+G
Sbjct:   66 GLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.451e-23
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = -3
Query:  262 GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 489
            G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA MENGVLTVT           KAIEISG
Sbjct:   75 GNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
The following BLAST results are available for this feature:
BLAST of CB304713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
HS17A_ORYSJ1.300e-2466.2917.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS177_ORYSJ2.895e-2465.1717.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_DAUCA4.939e-2464.0417.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS181_ORYSJ6.450e-2462.9218.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS17C_ARATH8.425e-2464.0417.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS16C_ORYSJ8.425e-2472.3716.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP16_SOYBN1.437e-2364.0418.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP13_SOYBN2.451e-2364.0417.5 kDa class I heat shock protein OS=Glycine max... [more]
HS174_ORYSJ2.451e-2362.9217.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_ORYSJ2.451e-2371.0516.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_G11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_G11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304713 ID=CB304713; Name=CB304713; organism=Citrus sinensis; type=EST; length=530bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAATATATTTTATTGCA
TCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACTGGCTCC
TGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAACAGGGGG
GAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTTGCTTT
CGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATTTACA
CTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCTC
CTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCCT
TAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAAC
TTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCTTCCTG
CTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTCAACCT
CAACTTTCACTTCTTCTTTCCTCAGCCCTG
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