CB304717

Overview
NameCB304717
Unique NameCB304717
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13484 contig Csv1_Contig13484:501..1053. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304717 vs. ExPASy Swiss-Prot
Match: PSY_CUCME (Phytoene synthase, chloroplastic OS=Cucumis melo GN=PSY PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.506e-45
Identity = 89/104 (85.58%), Postives = 96/104 (92.31%), Query Frame = -2
Query:  241 DELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRPS 552
            DELAQAGLSD+DIFAG VT KWRNFMKNQIKRARMFFD AE GV EL++ASRWPVWASLLLYRQILDEIEANDY+NFTKRAYVSKAKKI ALP+AY ++LL PS
Sbjct:  319 DELAQAGLSDEDIFAGRVTDKWRNFMKNQIKRARMFFDEAEKGVLELNKASRWPVWASLLLYRQILDEIEANDYDNFTKRAYVSKAKKILALPMAYGRALLGPS 422          
BLAST of CB304717 vs. ExPASy Swiss-Prot
Match: PSY_ARATH (Phytoene synthase, chloroplastic OS=Arabidopsis thaliana GN=PSY1 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 2.506e-45
Identity = 89/104 (85.58%), Postives = 96/104 (92.31%), Query Frame = -2
Query:  241 DELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRPS 552
            DELAQAGLSD+DIFAG+VT KWRNFMK Q+KRARMFFD AE GVTELS ASRWPVWASLLLYR+ILDEIEANDYNNFTKRAYV K KKIAALP+AYAKS+L+ S
Sbjct:  313 DELAQAGLSDEDIFAGKVTDKWRNFMKMQLKRARMFFDEAEKGVTELSAASRWPVWASLLLYRRILDEIEANDYNNFTKRAYVGKVKKIAALPLAYAKSVLKTS 416          
BLAST of CB304717 vs. ExPASy Swiss-Prot
Match: PSY_NARPS (Phytoene synthase, chloroplastic OS=Narcissus pseudonarcissus GN=PSY PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.061e-44
Identity = 84/103 (81.55%), Postives = 94/103 (91.26%), Query Frame = -2
Query:  244 DELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRP 552
            DELA+AGLSD+D+F G+VT KWR+FMK QIKRAR FF+ AE GVTELS+ASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSK K++AALP+AY KSLL P
Sbjct:  310 DELAEAGLSDEDVFTGKVTDKWRSFMKRQIKRARTFFEQAEKGVTELSQASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKVKRLAALPLAYGKSLLIP 412          
BLAST of CB304717 vs. ExPASy Swiss-Prot
Match: PSY_MAIZE (Phytoene synthase, chloroplastic OS=Zea mays GN=Y1 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.796e-43
Identity = 85/103 (82.52%), Postives = 91/103 (88.35%), Query Frame = -2
Query:  244 DELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRP 552
            DELAQAGLSD+DIF G VT +WRNFMK QIKRARMFF+ AE GV ELS+ASRWPVWASLLLYRQILDEIEANDYNNFTKRAYV K KK+ ALP+AY KSLL P
Sbjct:  300 DELAQAGLSDEDIFKGVVTNRWRNFMKRQIKRARMFFEEAERGVNELSQASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVGKGKKLLALPVAYGKSLLLP 402          
BLAST of CB304717 vs. ExPASy Swiss-Prot
Match: PSY1_SOLLC (Phytoene synthase 1, chloroplastic OS=Solanum lycopersicum GN=PSY1 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 3.387e-42
Identity = 85/105 (80.95%), Postives = 94/105 (89.52%), Query Frame = -2
Query:  238 DELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRPSR 552
            DELAQAGLSD+DIFAG VT KWR FMK QI RAR FFD AE GVTELS ASR+PVWASL+LYR+ILDEIEANDYNNFTKRAYVSK+KK+ ALPIAYAKSL+ P++
Sbjct:  302 DELAQAGLSDEDIFAGRVTDKWRIFMKKQIHRARKFFDEAEKGVTELSSASRFPVWASLVLYRKILDEIEANDYNNFTKRAYVSKSKKLIALPIAYAKSLVPPTK 406          
BLAST of CB304717 vs. ExPASy Swiss-Prot
Match: PSY_CAPAN (Phytoene synthase, chloroplastic OS=Capsicum annuum GN=PSY1 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.681e-41
Identity = 86/105 (81.90%), Postives = 92/105 (87.62%), Query Frame = -2
Query:  238 DELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRPSR 552
            DELAQAGLSD+DIFAG VT KWR FMK QI+RAR FFD AE GVTELS ASRWPV ASLLLYR+ILDEIEANDYNNFTKRAYVSK KK+ ALPIAYAKSL+  +R
Sbjct:  314 DELAQAGLSDEDIFAGRVTDKWRIFMKKQIQRARKFFDEAEKGVTELSAASRWPVLASLLLYRRILDEIEANDYNNFTKRAYVSKPKKLIALPIAYAKSLVPSTR 418          
BLAST of CB304717 vs. ExPASy Swiss-Prot
Match: PSY2_SOLLC (Phytoene synthase 2, chloroplastic (Fragment) OS=Solanum lycopersicum GN=PSY2 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 8.342e-41
Identity = 83/103 (80.58%), Postives = 91/103 (88.35%), Query Frame = -2
Query:  244 DELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRP 552
            DELAQAGLSD+DIFAG+VT KWR FMK QI+RAR FFD AE GVTELS ASRWPV ASLLLYR+ILDEIEANDYNNFT+RAYVSK KK+  LPIAYA+SL+ P
Sbjct:  198 DELAQAGLSDEDIFAGKVTDKWRIFMKKQIQRARKFFDEAEKGVTELSSASRWPVLASLLLYRKILDEIEANDYNNFTRRAYVSKPKKLLTLPIAYARSLVPP 300          
BLAST of CB304717 vs. ExPASy Swiss-Prot
Match: PSY_DAUCA (Phytoene synthase, chloroplastic OS=Daucus carota GN=PSY PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.633e-38
Identity = 74/106 (69.81%), Postives = 89/106 (83.96%), Query Frame = -2
Query:  235 DELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRPSRI 552
            +EL  AG++ + IF G+VT KWR+FMK QIKRARMFFD AE GV ELS ASRWPVWASLLLY+QILD IEANDY+NFTKRAYV KAKK+ +LP+AY+++L  PS +
Sbjct:  292 EELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPSTV 397          
BLAST of CB304717 vs. ExPASy Swiss-Prot
Match: CRTB_SYNE7 (Phytoene synthase OS=Synechococcus elongatus (strain PCC 7942) GN=crtB PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 9.266e-24
Identity = 50/99 (50.51%), Postives = 72/99 (72.73%), Query Frame = -2
Query:  256 DELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKS 552
            +ELAQ   S+ D+F G +  +WR FM+ Q+ RAR +F+ AE G+ +LS  +RWPVWASL+LYR+ILD IE N+Y+ F KRAYV   +K+ +LP+A  ++
Sbjct:  207 EELAQFNYSEQDLFNGVIDDRWRAFMQFQLDRARDYFEQAERGIRQLSHDARWPVWASLMLYREILDVIEQNNYDVFRKRAYVPTWRKLCSLPVAMLRA 305          
BLAST of CB304717 vs. ExPASy Swiss-Prot
Match: CRTY_SPIPL (Phytoene synthase OS=Spirulina platensis GN=crtB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.296e-21
Identity = 47/99 (47.47%), Postives = 67/99 (67.68%), Query Frame = -2
Query:  256 DELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKS 552
            D+LA    ++ D+  G+V  +WR  M+ QI+RAR F+ +AE G+  L    RWPVW +L+LYRQILDEIE N+Y+ F +RAYV   KK+  LP+A  ++
Sbjct:  208 DDLALFNYTEADLLNGKVDERWRELMRFQIQRARKFYTLAEEGIAALHPDIRWPVWTALMLYRQILDEIERNEYDVFNQRAYVPTWKKMMCLPLAQLRA 306          
The following BLAST results are available for this feature:
BLAST of CB304717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PSY_CUCME2.506e-4585.58Phytoene synthase, chloroplastic OS=Cucumis melo G... [more]
PSY_ARATH2.506e-4585.58Phytoene synthase, chloroplastic OS=Arabidopsis th... [more]
PSY_NARPS8.061e-4481.55Phytoene synthase, chloroplastic OS=Narcissus pseu... [more]
PSY_MAIZE1.796e-4382.52Phytoene synthase, chloroplastic OS=Zea mays GN=Y1... [more]
PSY1_SOLLC3.387e-4280.95Phytoene synthase 1, chloroplastic OS=Solanum lyco... [more]
PSY_CAPAN1.681e-4181.90Phytoene synthase, chloroplastic OS=Capsicum annuu... [more]
PSY2_SOLLC8.342e-4180.58Phytoene synthase 2, chloroplastic (Fragment) OS=S... [more]
PSY_DAUCA8.633e-3869.81Phytoene synthase, chloroplastic OS=Daucus carota ... [more]
CRTB_SYNE79.266e-2450.51Phytoene synthase OS=Synechococcus elongatus (stra... [more]
CRTY_SPIPL3.296e-2147.47Phytoene synthase OS=Spirulina platensis GN=crtB P... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_H04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_H04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304717 ID=CB304717; Name=CB304717; organism=Citrus sinensis; type=EST; length=553bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNTACAATATTGAATAGG
GCATCGGCCTTGGATTGTGAATTGGATTCACTATTCTAACTTTACCATCA
AATACATGCTGCATACCAACAATTCCTAATATACAAGCAATCATTTTCAT
TTTTTTTTCCACTTTGAATCCGTTTCAACTATATATGCTTCTAAACTTTG
ATGTTAAATGTTCAGTTTAAGCCTTACTGGTATATATTCTTGACGGGCGT
AAGAGGGATTTTGCATATGCAATTGGTAGTGCAGCTATCTTCTTGGCTTT
ACTCACATAAGCTCTCTTTGTGAAGTTGTTGTAATCATTGGCCTCAATCT
CATCCAGTATTTGCCGGTACAACAGCAATGAAGCCCATACCGGCCATCGA
CTAGCTTCACTCAGCTCGGTCACACCGTTCTCAGCCATATCAAAGAACAT
CCTTGCCCTCTTAATTTGGTTCTTCATGAAGTTTCTCCATTTAATGGTCA
CCTCTCCAGCAAATATGTCATCATCTGAAAGCCCTGCCTGTGCCAACTCA
TCT
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