CB304718

Overview
NameCB304718
Unique NameCB304718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13502 contig Csv1_Contig13502:297..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304718 vs. ExPASy Swiss-Prot
Match: RPAB4_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus GN=Polr2k PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.446e-12
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = -2
Query:  314 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 460
            P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct:   10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58          
BLAST of CB304718 vs. ExPASy Swiss-Prot
Match: RPAB4_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens GN=POLR2K PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.446e-12
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = -2
Query:  314 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 460
            P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct:   10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58          
BLAST of CB304718 vs. ExPASy Swiss-Prot
Match: RPAB4_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus GN=POLR2K PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.446e-12
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = -2
Query:  314 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 460
            P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct:   10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58          
BLAST of CB304718 vs. ExPASy Swiss-Prot
Match: RPAB4_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyces pombe GN=rpc10 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.221e-12
Identity = 27/49 (55.10%), Postives = 40/49 (81.63%), Query Frame = -2
Query:  314 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 460
            P+P  + Y+C DCG  NT++  +VI+CRECG+R++YK RT+R+VQ+EAR
Sbjct:   15 PRPATMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63          
The following BLAST results are available for this feature:
BLAST of CB304718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RPAB4_MOUSE1.446e-1259.18DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB4_HUMAN1.446e-1259.18DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB4_BOVIN1.446e-1259.18DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB4_SCHPO3.221e-1255.10DNA-directed RNA polymerases I, II, and III subuni... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_H06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_H06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304718 ID=CB304718; Name=CB304718; organism=Citrus sinensis; type=EST; length=524bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAATCAAACCCCATATGA
GTTAGCATATATTTGTCTATGGCGACTATAACACAACAAGCTTTCTATTT
TTGCAGTTTATATCTAATCTCAATTAAGTTTTAGGAACAATATGTGCCCG
AGACACAACATACTTGCATCATGGAATGGTCATTACAGCTATTCTACAAA
TCACCACACAAACCACAGTGAAAACTGCTGAGAAGCTACAACGAAACTGG
CAGTTTGCAAGACAGCTGGTTATGCTTCATAGGCATTGGCTCTCCACCCA
CATCTCCCCATTAACGTGCCTCATATTGAACAATTCGGCGGGTGCGCTTC
TTGTACAAGATACGGTAACCGCATTCACGGCACTGGATGACGTCACCTGG
CTTAAGCGTGTTCTCCATTCCACAATCTCCACAGATGTAGCTGACTGGCT
CTGGCTGAGGATCCATTGCGGGTTCGAGGTTCAAGAGCTTCCCAAACAAA
GTCAAAGAAACAACTTTCTAGCCC
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