CB304719

Overview
NameCB304719
Unique NameCB304719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:236..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304719 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.227e-16
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = -2
Query:  309 ADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 476
            AD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:   11 ADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CB304719 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.010e-13
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = -2
Query:  306 DRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCGS 473
            D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:   11 DKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CB304719 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.347e-12
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = -2
Query:  312 ADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 476
            AD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:   11 ADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CB304719 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = -2
Query:  312 ADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 476
            +D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:   11 SDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CB304719 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = -2
Query:  309 ADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 476
            AD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:   11 ADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
The following BLAST results are available for this feature:
BLAST of CB304719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MT3_CARPA2.227e-1664.29Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC3.010e-1357.14Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE4.347e-1263.64Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV2.818e-1156.36Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO2.818e-1157.14Metallothionein-like protein type 3 OS=Malus domes... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_H09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_H09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304719 ID=CB304719; Name=CB304719; organism=Citrus sinensis; type=EST; length=477bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGACTAACAATAATACATTA
AAATTAAACCACACAAGGCCACGGTCATGGCCATGGCCATATATTACATG
ATTATGAAGAAGGAAACACAAAACATTACGAGTGATGGGTGACACAACAC
GCACATCACTCCACACACTAGTAGTAGACCATCATAAAAACGAAGTAGAG
AATTTTTCTTTTTTTTTAATCACCCTTACATTATTCTTAACCCCCACAAT
ATTTAGGCACACTTGCAGCTTCTTATTTTTTGCTGCATGTGTTTGCTTAT
TAGTGACTACCACAAGTGCAGTTCACACAAGCGCAGGTGGGGCCGCACTT
GCAGTTACCTTCAGTCTCAGCAGCCTGAACGTCCATGACAACAACGGTGC
TGACAAAGCTCAAGTCAGTCTCGACGAAGTCAGCAGCATAGCTGCTTCCC
TTCTTCACACACTGGCTCCTGTCAGCG
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