CB304720

Overview
NameCB304720
Unique NameCB304720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5402 contig Csv1_Contig5402:504..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304720 vs. ExPASy Swiss-Prot
Match: GSTF_HYOMU (Glutathione S-transferase OS=Hyoscyamus muticus PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.523e-20
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = -3
Query:  313 VYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 501
            VYE+RL  SKYL  DSFTL DLHH P +N L+GT VK LFD+RPHVSAW ADI +RPAW+K +
Sbjct:  146 VYESRLKDSKYLGGDSFTLADLHHAPAMNYLMGTKVKSLFDSRPHVSAWCADILARPAWSKAI 208          
BLAST of CB304720 vs. ExPASy Swiss-Prot
Match: GST11_ARATH (Glutathione S-transferase 11 OS=Arabidopsis thaliana GN=GST11 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.113e-19
Identity = 47/63 (74.60%), Postives = 50/63 (79.37%), Query Frame = -3
Query:  313 VYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 501
            VYE RL +SKYLA D FTLVDLH +P I  LLGTP KKLFD RPHVSAW ADITSRP+  KVL
Sbjct:  147 VYEHRLGESKYLASDKFTLVDLHTIPVIQYLLGTPTKKLFDERPHVSAWVADITSRPSAKKVL 209          
BLAST of CB304720 vs. ExPASy Swiss-Prot
Match: GSTF1_ARATH (Glutathione S-transferase 1 OS=Arabidopsis thaliana GN=GST1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.454e-19
Identity = 47/63 (74.60%), Postives = 50/63 (79.37%), Query Frame = -3
Query:  313 VYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 501
            VYE RL +SKYLA D FTLVDLH +P I  LLGTP KKLFD RPHVSAW ADITSRP+  KVL
Sbjct:  146 VYEHRLGESKYLASDHFTLVDLHTIPVIQYLLGTPTKKLFDERPHVSAWVADITSRPSAQKVL 208          
BLAST of CB304720 vs. ExPASy Swiss-Prot
Match: GSTF2_TOBAC (Glutathione S-transferase APIC OS=Nicotiana tabacum GN=APIC PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.239e-19
Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = -3
Query:  301 VYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 501
            +YE RL++SKYL  DSFTLVDLHH+PNI  L+ T VK++FD+RP VSAW ADI +RPAW K L  L+
Sbjct:  146 IYETRLAESKYLGGDSFTLVDLHHIPNIYYLMSTKVKEVFDSRPRVSAWCADILARPAWVKGLEKLQ 212          
BLAST of CB304720 vs. ExPASy Swiss-Prot
Match: GSTF1_TOBAC (Glutathione S-transferase PARB OS=Nicotiana tabacum GN=PARB PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.742e-18
Identity = 41/67 (61.19%), Postives = 53/67 (79.10%), Query Frame = -3
Query:  301 VYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 501
            +YE +L++SKYL  DSFTLVDLHH+PNI  L+ + VK++FD+RP VSAW ADI +RPAW K L  L+
Sbjct:  146 IYETQLAESKYLGGDSFTLVDLHHIPNIYYLMSSKVKEVFDSRPRVSAWCADILARPAWVKGLEKLQ 212          
BLAST of CB304720 vs. ExPASy Swiss-Prot
Match: GSTF6_ARATH (Glutathione S-transferase 6, chloroplastic OS=Arabidopsis thaliana GN=GST6 PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 44/67 (65.67%), Postives = 53/67 (79.10%), Query Frame = -3
Query:  301 VYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 501
            VYEARL++S++LA DSFTL DLHHLP I+ LLGT  K LFD+RP VS W   I++RPAWAKV+ L K
Sbjct:  196 VYEARLAKSEFLAGDSFTLADLHHLPAIHYLLGTDSKVLFDSRPKVSEWIKKISARPAWAKVIDLQK 262          
BLAST of CB304720 vs. ExPASy Swiss-Prot
Match: GSTF_SILCU (Glutathione S-transferase OS=Silene cucubalus GN=GST PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = -3
Query:  301 VYEARLSQSKYL-ACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 501
            VYEARL++S+YL A DSFTLVDLHHLP +  L+GT VKKLF+ R HVSAW   I +RP+W K LAL K
Sbjct:  148 VYEARLTESEYLGANDSFTLVDLHHLPLLGYLMGTQVKKLFEERAHVSAWCKKILARPSWEKTLALQK 215          
BLAST of CB304720 vs. ExPASy Swiss-Prot
Match: GST16_ARATH (Glutathione S-transferase 16 OS=Arabidopsis thaliana GN=GST16 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.504e-16
Identity = 41/63 (65.08%), Postives = 47/63 (74.60%), Query Frame = -3
Query:  313 VYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 501
            VYEARL + KYLA ++FTL DLHH+P I  LLGTP KKLF  RP V+ W A+IT RPA  KVL
Sbjct:  150 VYEARLKEFKYLAGETFTLTDLHHIPVIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKVL 212          
BLAST of CB304720 vs. ExPASy Swiss-Prot
Match: GSTF4_ARATH (Glutathione S-transferase PM24 OS=Arabidopsis thaliana GN=PM24.1 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 3.352e-16
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = -3
Query:  316 VYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKV 501
            VYEARL + KYLA ++FTL DLHH+P I  LLGTP KKLF  RP V+ W A+IT RPA  KV
Sbjct:  150 VYEARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKV 211          
BLAST of CB304720 vs. ExPASy Swiss-Prot
Match: GSTF1_ORYSJ (Probable glutathione S-transferase GSTF1 OS=Oryza sativa subsp. japonica GN=GSTF1 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = -3
Query:  304 VYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALL 501
            VYEARLSQS YLA D  +  DL+H P     +GTP   LFD+ PHV AW   + +RP+  K+ A++
Sbjct:  149 VYEARLSQSTYLAGDFVSFADLNHFPYTFYFMGTPYASLFDSYPHVKAWWERLMARPSVKKLAAVM 214          
The following BLAST results are available for this feature:
BLAST of CB304720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
GSTF_HYOMU8.523e-2068.25Glutathione S-transferase OS=Hyoscyamus muticus PE... [more]
GST11_ARATH1.113e-1974.60Glutathione S-transferase 11 OS=Arabidopsis thalia... [more]
GSTF1_ARATH1.454e-1974.60Glutathione S-transferase 1 OS=Arabidopsis thalian... [more]
GSTF2_TOBAC3.239e-1964.18Glutathione S-transferase APIC OS=Nicotiana tabacu... [more]
GSTF1_TOBAC2.742e-1861.19Glutathione S-transferase PARB OS=Nicotiana tabacu... [more]
GSTF6_ARATH4.677e-1865.67Glutathione S-transferase 6, chloroplastic OS=Arab... [more]
GSTF_SILCU6.108e-1866.18Glutathione S-transferase OS=Silene cucubalus GN=G... [more]
GST16_ARATH1.504e-1665.08Glutathione S-transferase 16 OS=Arabidopsis thalia... [more]
GSTF4_ARATH3.352e-1664.52Glutathione S-transferase PM24 OS=Arabidopsis thal... [more]
GSTF1_ORYSJ9.445e-1148.48Probable glutathione S-transferase GSTF1 OS=Oryza ... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_H10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_H10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304720 ID=CB304720; Name=CB304720; organism=Citrus sinensis; type=EST; length=503bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCAGAATATCTCCAGCTT
CGTTTTATTAGGGTACATAGATAAAATAAAAACCTCAAGCCATCAACATC
AAAGTTGAATATGAGGCAGTGCTGTTGAAATACAAAAGCGGTAGTACAAA
CTACAAAGCATCAATATTCTGCAGAATATTGATGACAAACGCCAAACAAG
AGAATACGAACTCGAAAACCAGCCTAATAGGTATTACAAAAGATAAGTGA
CCACCGAGGAGCGACTAACGTCTAGTAGGTAGTGGGCAGAGTGTTCAGTG
TTTGAGCAAGGCAAGGACCTTAGCCCAAGCCGGTCTGGAAGTGATATCAG
CTGCCCATGCGCTAACATGGGGGCGTGCATCAAACAGCTTCTTGACAGGC
GTCCCCAACAACAAATTAATATTGGGGAGATGATGCAAATCGACCAAGGT
GAAGCTGTCGCACGCCAAGTATTTGGACTGAGACAAACGGGCCTCGTAAA
CAT
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