CB304725

Overview
NameCB304725
Unique NameCB304725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length443
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13690 contig Csv1_Contig13690:10..452. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304725 vs. ExPASy Swiss-Prot
Match: MDHG_CITLA (Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.554e-15
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = -3
Query:  307 VRLARAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 438
            VRL R GIEE+YSLGPLNEYER GLEKAKKELAGSI+KGVSF+R
Sbjct:  312 VRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355          
BLAST of CB304725 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.683e-14
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = -3
Query:  307 VRLARAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 438
            VRL R GI+E+YSLGPLNEYER GLEKAKKELAGSI+KGVSF+R
Sbjct:  312 VRLGRNGIDEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355          
BLAST of CB304725 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.352e-14
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = -3
Query:  304 VRLARAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 438
            VRL R G EE+Y LGPLNEYER GLEKAK ELAGSIQKGV F+RK
Sbjct:  310 VRLGRTGAEEVYQLGPLNEYERIGLEKAKDELAGSIQKGVEFIRK 354          
BLAST of CB304725 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.091e-13
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = -3
Query:  304 VRLARAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 438
            VRL R G EE++ LGPLNEYER GLEKAK+ELAGSIQKGV F+RK
Sbjct:  314 VRLGRTGAEEVFQLGPLNEYERVGLEKAKEELAGSIQKGVDFIRK 358          
BLAST of CB304725 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.091e-13
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = -3
Query:  304 VRLARAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 438
            VRL R G EE++ LGPLNEYER GLEKAK+ELAGSIQKGV F+RK
Sbjct:  314 VRLGRTGAEEVFQLGPLNEYERVGLEKAKEELAGSIQKGVDFIRK 358          
BLAST of CB304725 vs. ExPASy Swiss-Prot
Match: MDHG_ORYSJ (Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.861e-13
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = -3
Query:  304 VRLARAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 438
            VRL R GIEEI SLGPLNE+ERAGLEKAKKELA SIQKGV+F+ K
Sbjct:  312 VRLGRCGIEEILSLGPLNEFERAGLEKAKKELAESIQKGVAFINK 356          
BLAST of CB304725 vs. ExPASy Swiss-Prot
Match: MDHG_SOYBN (Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.687e-12
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = -3
Query:  304 VRLARAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 438
            VRL R G+EEI  LGPLN+YER  LEKAKKELA SI+KG+SF+RK
Sbjct:  309 VRLGRVGVEEILPLGPLNDYERESLEKAKKELAASIEKGISFIRK 353          
BLAST of CB304725 vs. ExPASy Swiss-Prot
Match: MDHG2_ARATH (Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.509e-12
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = -3
Query:  304 VRLARAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 438
            VRL R GI+E+Y LGPLNEYER GLEKAKKEL+ SI KGV+F +K
Sbjct:  310 VRLGRCGIDEVYGLGPLNEYERMGLEKAKKELSVSIHKGVTFAKK 354          
The following BLAST results are available for this feature:
BLAST of CB304725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MDHG_CITLA7.554e-1586.36Malate dehydrogenase, glyoxysomal OS=Citrullus lan... [more]
MDHG_CUCSA1.683e-1484.09Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
MDHG1_ARATH8.352e-1480.00Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
MDHG2_BRANA1.091e-1377.78Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]
MDHG1_BRANA1.091e-1377.78Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHG_ORYSJ1.861e-1382.22Malate dehydrogenase, glyoxysomal OS=Oryza sativa ... [more]
MDHG_SOYBN2.687e-1273.33Malate dehydrogenase, glyoxysomal OS=Glycine max P... [more]
MDHG2_ARATH3.509e-1273.33Probable malate dehydrogenase, glyoxysomal OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304725 ID=CB304725; Name=CB304725; organism=Citrus sinensis; type=EST; length=443bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGAACTCTGATTTTGAATTG
ATTAAAATGATAAAACAGGGGGCAGTTCGGCATCTACATATTCTTTATCC
CTTCATTACAAGAATATCAAAAGAACCAAACCAACCCCACTAAGATGAAT
CTTTTGCTTCTTCTTTGTAACTAACTTAATTCAATCTGATTATGGAAAAA
CGAAAACCCTACCTCTTATTCTGGGGAAAGTAATCTTGAGATATTTGAGG
GAAACAACAAAAGCACAACCATTATCATTAGTCACCATGGGATTGGTTAC
TCATTTCCTGACAAAACTGACTCCCTTCTGAATGCTTCCCGCTAACTCTT
TCTTTGCCTTCTCCAAACCAGCCCTCTCATACTCATTCAATGGGCCAAGT
GAGTAAATTTCCTCAATTCCAGCACGGGCAAGCCGTACCGTAA
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